SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61795

Length: 191 nt

UniGene Fasta

>sp_v3.0_unigene61795
CAATTCAAGACACATCCAAACATTAACAAGGAGTTATTTTAAAAACAAAAAGGAGAATCTGTTAGGACTCAAGGATCCTAGCAGGCCTTTTCCTGCTGGTCCAACTGGTGATGCCCTGGGTGTGGGTCTGGTGAAGTGGAGAATGCAAAGTGCAGATGAGACACTTGTGCCTTTGAGTATCAATTGTTGGC

Ace file of the UniGene sp_v3.0_unigene61795

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coatomer subunit delta [Arabidopsis thaliana] ref\|NP_001031836.1\| coatomer subunit delta [Arabidopsis thaliana] sp\|Q93Y22.2\|COPD_ARATH RecName: Full=Coatomer subunit delta; AltName: Full=Delta-coat protein; Short=Delta-COP gb\|AAK96656.1\| coatomer delta su	-	-	5.0e-14	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	Gene names
Sma3	GSVIVT00030145001; PHYPADRAFT_204046; POPTRDRAFT_570607; POPTRDRAFT_792555; POPTRDRAFT_824854; RCOM_1604100; VITISV_008875;

Source	GOs	Term	Type	Identity
Sma3	clathrin adaptor complex	GO:0030131	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05010.1	clathrin adaptor complexes medium subunit family protein chr5:1477137-1479872 FORWARD LENGTH=527	2.0e-16	60%
RefSeq	Arabidopsis thaliana	NP_001031836.1	coatomer subunit delta [Arabidopsis thaliana]	3.0e-16	60%
RefSeq	Populus trichocarpa	XP_002318291.1	predicted protein [Populus trichocarpa]	3.0e-20	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9J3

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 63 - 529

Fln protein: NSRHIQTLTRSYFKNKKENLLGLKDPSRPFPAGPTGDALGVGLVKWRMQSADETLVPLSINCW

Protein Length: 64

Fln nts: CAATTCAAGACACATCCAAACATTAACAAGGAGTTATTTTAAAAACAAAAAGGAGAATCTGTTAGGACTCAAGGATCCTAGCAGGCCTTTTCCTGCTGGTCCAACTGGTGATGCCCTGGGTGTGGGTCTGGTGAAGTGGAGAATGCAAAGTGCAGATGAGACACTTGTGCCTTTGAGTATCAATTGTTGGC

Fln Alignment:

G5KS2UX02I3530___KENLLGLKDPSRPFPAGPTGDALGVGLVKWRMQSADETLVPLSINCW
D5A9J3_______________KENLLGLKDPSRPFPAGPTGDALGVGLVKWRMQSADETLVPLSINCW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain