SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61759

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene61759
AATGTCCACCCAGAGCTCCTGGTGGCCCATGCCTACACTCGGTATTTGGGAGACCTGTCTGGGGGGCAGGTGCTGAAGAAAATTGCCCAAAAGGCCCTCCAGCTGCCCAGCACTGGGGAAGGGCTGGCTTTCTTCACCTTCGATGGAGTCTCCAATGCCACCAAGTTCAAGCAGCTCTATCGCTCCCG

Ace file of the UniGene sp_v3.0_unigene61759

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heme oxygenase-1 (Fragment) n=1 Tax=Anas platyrhynchos RepID=C6KI64_ANAPL	-	-	1.0e-26	100%
FL-Next	sp=Heme oxygenase; Guillardia theta (Cryptomonas phi). Plastid; Chloroplast.	-	-	0.0	63%
Sma3	Heme oxygenase	-	-	3.452e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Heme oxygenase.	EC:1.14.99.3	-	7.962e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860		7.962e-17	%

Source	Gene names
Sma3	Grc000118; pbsA;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	heme oxygenase (decyclizing) activity	GO:0004392	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	heme oxidation	GO:0006788	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haem oxygenase	IPR002051	-	-
Sma3	Haem oxygenase-like	IPR016053	-	-
Sma3	Haem oxygenase-like, multi-helical	IPR016084	-	-
Sma3	Haem oxygenase conserved site	IPR018207	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O78497

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 62 - 237

Fln protein: NVHPELLVAHAYTRYLGDLSGGQVLKKIAQKALQLPSTGEGLAFFTFDGVSNATKFKQLYRS

Protein Length: 63

Fln nts: AATGTCCACCCAGAGCTCCTGGTGGCCCATGCCTACACTCGGTATTTGGGAGACCTGTCTGGGGGGCAGGTGCTGAAGAAAATTGCCCAAAAGGCCCTCCAGCTGCCCAGCACTGGGGAAGGGCTGGCTTTCTTCACCTTCGATGGAGTCTCCAATGCCACCAAGTTCAAGCAGCTCTATCGCTCCCG

Fln Alignment:

G5KS2UX02FYYW4___PELLVAHAYTRYLGDLSGGQVLKKIAQKALQLPSTGEGLAFFTFDGVSNATKFKQLYR
O78497_______________PLLLIAHAYTRYLGDLSGGQILKKIAQRALNVPNS-QGLAFYEFDKIDDEQAFKQKYK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain