SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61609

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene61609
AATGTTGAGTGAAGGTGTTGAAACTCAAAGAGGACATGTACCATACCGTGATAGCAAGCTCACTCGAATTTTACAACCTGCATTGGGTGGTAATGCAAAAACTGCAATTATTTGTAATATTACACCTGCTTTGATTCATGTTGATGAAACAAAGGGGACACTTCAGTTTGCAAGCAGAGCATTACATGTCACAAATTGTGCTCAAGTCAATGAGATCATGACTGATACAGCATTGCTAAAGAGAC

Ace file of the UniGene sp_v3.0_unigene61609

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative kinesin-like centromere protein [Arabidopsis thaliana]	-	-	3.0e-31	86%
FL-Next	sp=Kinesin-like protein FLA10; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	0.0	48%
Sma3	Putative kinesin heavy chain	-	-	5.987e-14	-

Source	Gene names
Sma3	AT4g24170; AT4g38950; At1g18370; At1g59540; At2g21300; At3g43210; At3g51150; At4g24170; At4g38950; AtNACK1; AtNACK2; CHLREDRAFT_114085; CHLREDRAFT_99147; F14P13.22; F19H22.50; F24M12.190; F7K15_60; GSVIVT00000663001; GSVIVT00014496001; GSVIVT00014990001;

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	male meiosis cytokinesis	GO:0007112	Biological Process	-
Sma3	radial microtubular system formation	GO:0010245	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Ribosome-associated, YjgA	IPR006839	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G10180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:3146393-3154644 REVERSE LENGTH=1273	4.0e-38	86%
RefSeq	Arabidopsis thaliana	NP_187629.3	centromeric protein E [Arabidopsis thaliana]	5.0e-38	86%
RefSeq	Populus trichocarpa	XP_002308893.1	predicted protein [Populus trichocarpa]	4.0e-36	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P46869

Fln msg: Distance to subject end: 415 aas, your sequence is shorter than subject: 81 - 786

Fln protein: MLSEGVETQRGHVPYRDSKLTRILQPALGGNAKTAIICNITPALIHVDETKGTLQFASRALHVTNCAQVNEIMTDTALLKR

Protein Length: 82

Fln nts: AATGTTGAGTGAAGGTGTTGAAACTCAAAGAGGACATGTACCATACCGTGATAGCAAGCTCACTCGAATTTTACAACCTGCATTGGGTGGTAATGCAAAAACTGCAATTATTTGTAATATTACACCTGCTTTGATTCATGTTGATGAAACAAAGGGGACACTTCAGTTTGCAAGCAGAGCATTACATGTCACAAATTGTGCTCAAGTCAATGAGATCATGACTGATACAGCATTGCTAAAGAGAC

Fln Alignment:

G5KS2UX02J3N9P___MLSEGVETQRGHVPYRDSKLTRILQPALGGNAKTAIICNITPALIHVDETKGTLQFASRALHVTNCAQVNEIMTDTAL
P46869_______________VISALVDGKSGHIPYRDSKLTRLLQDSLGGNTKTVMVANIGPADWNYDETMSTLRYANRAKNIQNKPKINEDPKDAML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain