SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61445

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene61445
AATGTAAACCAGAGGGCTACGATAATATTCCAGCAGAAATACCAGATCCAAAGGCAAAAGCCTGATGACTGGGAGGAGGAAGATGATGGGATATGGAAAGCACCAAAGATCCCCAATCCAGCATACAAGGGGCCTTGGAAGGCGAAGAAATTAAAATCCCAACTACAAGGGGAAGTGGAAAACTCCATGGGTTGACAATCCATTTAAACACACT

Ace file of the UniGene sp_v3.0_unigene61445

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calreticulin-3 n=3 Tax=Andropogoneae RepID=B6TA28_MAIZE	-	-	2.0e-17	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%

Source	Gene names
Sma3	GSVIVT00010301001; POPTRDRAFT_562210; POPTRDRAFT_920775;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Calreticulin	IPR009169	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08450.1	CRT3, PSL1, EBS2, AtCRT3 calreticulin 3 chr1:2668008-2671800 REVERSE LENGTH=424	6.0e-16	62%
RefSeq	Arabidopsis thaliana	NP_563816.1	calreticulin-3 [Arabidopsis thaliana]	8.0e-16	62%
RefSeq	Populus trichocarpa	XP_002309786.1	predicted protein [Populus trichocarpa]	7.0e-18	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRK0

Fln msg: warning!, putative chimeric sequence! or repetitive structure and overlapping frame ERROR between 182 and 164, Distance to subject end: 119 aas, your sequence is shorter than subject: 71 - 426

Fln protein: CKPEGYDNIPAEIPDPKAKA**LGGGR*WDMESTKDPQSSIQGALEGEEIKIPxxxxxxxxPWVDNPFKHT

Protein Length: 72

Fln nts: AATGTAAACCAGAGGGCTACGATAATATTCCAGCAGAAATACCAGATCCAAAGGCAAAAGCCTGATGACTGGGAGGAGGAAGATGATGGGATATGGAAAGCACCAAAGATCCCCAATCCAGCATACAAGGGGCCTTGGAAGGCGAAGAAATTAAAATCCCAxxxxxxxxxxxxxxxxxxxxxxxxCCATGGGTTGACAATCCATTTAAACACACT

Fln Alignment:

G5KS2UX02G700J___KPEGYDNIPAEIPDPKAKA**LGGGR*WDME------STKDPQSSIQGALEGEEIKIPTxxxxxxTPWVDNP
B8LRK0_______________KPEGYDYIPAEIPDPKAKK-----PDDWDEEDDGIWKAPKIPNPAYKGPWKAKKIKNPNxxxxxxTPWVDNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain