SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60997

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene60997
AATGTATAGAAAATCTAGCATTTTACTTGGTTGAGCTGTTATTGCTTCATTAGAAAATGATCAAATACAGTCCATCAATCCTTGCTGCTGCTGCTGTCTACACTGCTCAATGCACTTTGAAGAAGGATCCATGTTGGAGTAAAACACTTGGTCTTCACAAAG

Ace file of the UniGene sp_v3.0_unigene60997

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable G2/mitotic-specific cyclin (Fragment) n=1 Tax=Picea mariana RepID=O65064_PICMA	-	-	1.0e-13	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Probable G2/mitotic-specific cyclin	-	-	4.386e-06	-

Source	Gene names
Sma3	Sb32;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20590.1	Cyclin family protein chr1:7131166-7132183 REVERSE LENGTH=199	4.0e-12	52%
RefSeq	Arabidopsis thaliana	NP_173483.1	putative cyclin [Arabidopsis thaliana]	5.0e-12	52%
RefSeq	Populus trichocarpa	XP_002307791.1	predicted protein [Populus trichocarpa]	6.0e-12	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 53 - 465

Fln protein: CIENLAFYLVELLLLH*KMIKYSPSILAAAAVYTAQCTLKKDPCWSKTLGLHK

Protein Length: 54

Fln nts: AATGTATAGAAAATCTAGCATTTTACTTGGTTGAGCTGTTATTGCTTCATTAGAAAATGATCAAATACAGTCCATCAATCCTTGCTGCTGCTGCTGTCTACACTGCTCAATGCACTTTGAAGAAGGATCCATGTTGGAGTAAAACACTTGGTCTTCACAAAG

Fln Alignment:

G5KS2UX02JI037___NLAFYLVELLLLH*KMIKYSPSILAAAAVYTAQCTLKKDPCWSKTLGLH
D5AC16_______________NLVFFLTELSLMQYVMIKFPPSMLAAAAVYTARCTLQKMPVWSHVLKAH

SSRs (tot: 1)

Start position	End position	Sequence	Length
83	96	TGC TGC TGC TGC TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain