SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60983

Length: 147 nt

UniGene Fasta

>sp_v3.0_unigene60983
AATGTAGCAGCTCTGTAGAAATTAGAGAACTTTTAATTCATTCGATGTGTTTCTCAAATGGTTTTTGCTCGTGTAAATCATGTGAAGTCAGGTTGGAAAATCATCTTCATGGTGTTCACAACAGCAGCCTATGATGATCACAAGAAT

Ace file of the UniGene sp_v3.0_unigene60983

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytohesin 1, 2, 3, putative n=1 Tax=Ricinus communis RepID=B9RDE3_RICCO	-	-	7.0e-11	86%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	86%

Source	Gene names
Sma3	At1g01960; CHLREDRAFT_148829; F22M8.9; GEP2; GSVIVT00026361001; LOC_Os03g14260; OSTLU_36947; Os03g0246800; OsI_10738; OsJ_10127; Ot04g04420; PHYPADRAFT_175154; PHYPADRAFT_223615; POPTRDRAFT_572117; RCOM_1612320; T4C21_270;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	megagametogenesis	GO:0009561	Biological Process	-
Sma3	regulation of ARF protein signal transduction	GO:0032012	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SEC7-like	IPR000904	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Domain of unknown function DUF1981, SEC7 associated	IPR015403	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein chr3:22484804-22491510 FORWARD LENGTH=1793	4.0e-15	86%
RefSeq	Arabidopsis thaliana	NP_191645.1	SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana]	5.0e-15	86%
RefSeq	Populus trichocarpa	XP_002320064.1	predicted protein [Populus trichocarpa]	5.0e-15	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I376

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 546 aas, your sequence is shorter than subject: 49 - 1779

Fln protein: NVAAL*KLENF*FIRCVSQMVFARVNHVKSGWKIIFMVFTTAAYDDHKN

Protein Length: 50

Fln nts: AATGTAGCAGCTCTGTAGAAATTAGAGAACTTTTAATTCATTCGATGTGTTTCTCAAATGGTTTTTGCTCGTGTAAATCATGTGAAGTCAGGTTGGAAAATCATCTTCATGGTGTTCACAACAGCAGCCTATGATGATCACAAGAAT

Fln Alignment:

G5KS2UX02J1QCQ___IRCVSQMVFARVNHVKSGWKIIFMVFTTAAYDDHKN
F6I376_______________IRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain