SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60959

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene60959
AATGTCGATTGGTTGACAAAAGATAATGTCCCTGTGTTGGAAGCCATGGAAACTCATCTTGAAATTCGAAGATACTACCATGGGGACCATGCGATTGGGGCAAATCTTAATGACTCTCCAAACATCTTAGCTGCAAAACTGCAAGCTCGAAGCCCAAAATATATATCAATAATGAACCACCTGCGAATATATCTTCCAGAGCTTTTCCCAA

Ace file of the UniGene sp_v3.0_unigene60959

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Galacturonosyltransferase GAUT12/13/14/15-like protein n=1 Tax=Selaginella moellendorffii RepID=D8SK68_SELML	-	-	1.0e-26	80%
FL-Next	Isoform 2 of Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13	-	-	0.0	69%
Sma3	Glycosyltransferase, CAZy family GT8	-	-	1.225e-10	-

Source	Gene names
Sma3	At3g01040; At5g15470; At5g15470/T20K14_80; At5g54690; GSVIVT00021044001; GSVIVT00027429001; GT8D; LOC_Os03g11330; LOC_Os12g38930; Os03g0211800; Os12g0578500; OsI_10497; OsI_38869; OsI_38870; OsJ_09887; OsJ_36645; PHYPADRAFT_175027; PHYPADRAFT_68313; POPTR

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	glucuronoxylan biosynthetic process	GO:0010417	Biological Process	-
Sma3	xylan biosynthetic process	GO:0045492	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01040.1	GAUT13 galacturonosyltransferase 13 chr3:9392-11979 FORWARD LENGTH=533	2.0e-28	69%
RefSeq	Arabidopsis thaliana	NP_001118545.1	alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]	3.0e-28	69%
RefSeq	Populus trichocarpa	XP_002324094.1	glycosyltransferase [Populus trichocarpa]	1.0e-28	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV13-2

Fln msg: Distance to subject end: 191 aas, your sequence is shorter than subject: 70 - 532

Fln protein: NVDWLTKDNVPVLEAMETHLEIRRYYHGDHAIGANLNDSPNILAAKLQARSPKYISIMNHLRIYLPELFP

Protein Length: 71

Fln nts: AATGTCGATTGGTTGACAAAAGATAATGTCCCTGTGTTGGAAGCCATGGAAACTCATCTTGAAATTCGAAGATACTACCATGGGGACCATGCGATTGGGGCAAATCTTAATGACTCTCCAAACATCTTAGCTGCAAAACTGCAAGCTCGAAGCCCAAAATATATATCAATAATGAACCACCTGCGAATATATCTTCCAGAGCTTTTCCCAA

Fln Alignment:

G5KS2UX02F4WN5___DWLTKDNVPVLEAMETHLEIRRYYHGDHAIGANLND-SPNILAAKLQARSPKYISIMNHLRIYLPELFP
Q0WV13-2_____________DWLTRENVPVLEAVESHNSIRNYYHGNHIAGANLSETTPRTFASKLQSRSPKYISLLNHLRIYLPELFP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain