SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60952

Length: 262 nt

UniGene Fasta

>sp_v3.0_unigene60952
AATGTCATGTGGTGGGAACGCTGGGGTACATAGCACCGGAGCTGATACACACGGGCAAGGCCACGCCCAGCTCGGACGTTTTCAGCTTCGGGGTTCTGCTGTTGGAGGTGGCTTGCGGGAGGAGACCTGTGGATCCGTTGAAGGACACCGAGCGGATGATTTTGGCAGAGTGGGCGTGGGATCTGTATACCGAGGGGAGGCTGCTGGAGGCGTCGGATCCAAATCTAGGGAAGGCATATGATGTGGGCGAGATGGAGAAGGT

Ace file of the UniGene sp_v3.0_unigene60952

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor kinase Lecrk n=1 Tax=Gossypium hirsutum RepID=Q7Y0Y5_GOSHI	-	-	3.0e-23	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Putative receptor-type protein kinase LRK1	-	-	4.109e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	9.951e-11	-

Source	Gene names
Sma3	AT4g02410; AT4g02420; At2g37710; At4g02410; At4g02420; GSVIVT00001297001; GSVIVT00001298001; GSVIVT00001301001; GSVIVT00001302001; GSVIVT00005974001; GSVIVT00008553001; GSVIVT00008556001; GSVIVT00008558001; GSVIVT00018441001; GSVIVT00021359001; GSVIVT0002

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3		IPR001899	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02420.1	Concanavalin A-like lectin protein kinase family protein chr4:1064363-1066372 REVERSE LENGTH=669	7.0e-25	54%
RefSeq	Arabidopsis thaliana	NP_567234.1	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana]	9.0e-25	54%
RefSeq	Populus trichocarpa	XP_002303928.1	predicted protein [Populus trichocarpa]	5.0e-26	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 86 - 636

Fln protein: CHVVGTLGYIAPELIHTGKATPSSDVFSFGVLLLEVACGRRPVDPLKDTERMILAEWAWDLYTEGRLLEASDPNLGKAYDVGEMEK

Protein Length: 87

Fln nts: AATGTCATGTGGTGGGAACGCTGGGGTACATAGCACCGGAGCTGATACACACGGGCAAGGCCACGCCCAGCTCGGACGTTTTCAGCTTCGGGGTTCTGCTGTTGGAGGTGGCTTGCGGGAGGAGACCTGTGGATCCGTTGAAGGACACCGAGCGGATGATTTTGGCAGAGTGGGCGTGGGATCTGTATACCGAGGGGAGGCTGCTGGAGGCGTCGGATCCAAATCTAGGGAAGGCATATGATGTGGGCGAGATGGAGAAGGT

Fln Alignment:

G5KS2UX02H7YNN___HVVGTLGYIAPELIHTGKATPSSDVFSFGVLLLEVACGRRPVDPLKDTERMILAEWAWDLYTEGRLLEASDPNL-GK-AYDVGEMEK
A9NVC0_______________HVVGTLGYIAPELIQTGKATPSSDVFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPKLAGKGGYDVGEMEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain