SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60915

Length: 121 nt

UniGene Fasta

>sp_v3.0_unigene60915
AATGTATGCAAATCTTTGTAAACACTAACTGGAAGACAATTACATTGGAAGTTGAGAGCTCGGACACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCCCCTGACCA

Ace file of the UniGene sp_v3.0_unigene60915

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG5272 Ubiquitin	-	-	4.0e-11	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	AT5G03240; At2g36170; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; B1472F02.6; EgUbi; FUBI1; GSVIVT00006610001; GSVIVT00021580001; GSVIVT00028185001; GSVIVT00035709001; GSVIVT00037199001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; LpUBQ; MICPUCDR

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52590.1	UBQ1, EMB2167, ERD16, HAP4 ubiquitin extension protein 1 chr3:19505668-19506681 FORWARD LENGTH=128	1.0e-15	89%
RefSeq	Arabidopsis thaliana	NP_566969.1	60S ribosomal protein L40-2 [Arabidopsis thaliana]	2.0e-15	89%
RefSeq	Populus trichocarpa	XP_002333648.1	predicted protein [Populus trichocarpa]	9.0e-16	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP57

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 38 - 128

Fln protein: MQIFVNTNWKTITLEVESSDTIDNVKAKIQDKEGIPPD

Protein Length: 39

Fln nts: A_-_ATGTATGCAAATCTTTGTAAACACTAACTGGAAGACAATTACATTGGAAGTTGAGAGCTCGGACACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCCCCTGACCA

Fln Alignment:

G5KS2UX02GTJD9___MQIFVNT-NWKTITLEVESSDTIDNVKAKIQDKEGIPPD
B8LP57_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain