SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60907

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene60907
AATGTGATGAAAACTTGAGGAACGAGTGGGACATTCTATCCTTTGATGCTGATAATCCCACTCATAGATATCGCTATCTTGATACCTCCAGTCAGTGGTTTGTGCGACCTGTTTTGGAAACTCATGGTTGGGACCATGATGTTGGTTATGAAGGATTGAACTTGGAGAAGATGTTTGTGATTCAC

Ace file of the UniGene sp_v3.0_unigene60907

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translocase of chloroplast 120 [Arabidopsis thaliana] sp\|Q9LUS2.1\|TC120_ARATH RecName: Full=Translocase of chloroplast 120, chloroplastic; Short=AtToc120; AltName: Full=120 kDa chloroplast outer envelope protein dbj\|BAB02753.1\| chloroplast outer envelope	-	-	1.0e-19	81%
FL-Next	sp=Translocase of chloroplast 120, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%
Sma3	Protein translocase, putative	-	-	1.71e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, Acting on GTP; involved in cellular and subcellular movement.	EC:3.6.5.-	-	7.979e-08	-

Source	Gene names
Sma3	At2g16640; At3g16620; GSVIVT00036085001; LOC_Os10g40110; MGL6.15; OSJNBa0082M15.3; Os10g0548800; OsI_34561; OsJ_32367; PHYPADRAFT_188734; PHYPADRAFT_189669; PHYPADRAFT_216050; PHYPADRAFT_216964; POPTRDRAFT_200844; POPTRDRAFT_578875; POPTRDRAFT_713242; POP

Source	GOs	Term	Type	Identity
Sma3	chloroplast outer membrane	GO:0009707	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	viral envelope	GO:0019031	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	protein targeting to chloroplast	GO:0045036	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chloroplast protein import component Toc86/159	IPR005690	-	0.0	-
Sma3	AIG1	IPR006703	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16620.1	ATTOC120, TOC120 translocon outer complex protein 120 chr3:5658469-5661738 REVERSE LENGTH=1089	5.0e-25	81%
RefSeq	Arabidopsis thaliana	NP_188284.1	translocase of chloroplast 120 [Arabidopsis thaliana]	6.0e-25	81%
RefSeq	Populus trichocarpa	XP_002306172.1	predicted protein [Populus trichocarpa]	1.0e-25	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LUS2

Fln msg: Distance to subject end: 215 aas, your sequence is shorter than subject: 61 - 1089

Fln protein: CDENLRNEWDILSFDADNPTHRYRYLDTSSQWFVRPVLETHGWDHDVGYEGLNLEKMFVIH

Protein Length: 62

Fln nts: AATGTGATGAAAACTTGAGGAACGAGTGGGACATTCTATCCTTTGATGCTGATAATCCCACTCATAGATATCGCTATCTTGATACCTCCAGTCAGTGGTTTGTGCGACCTGTTTTGGAAACTCATGGTTGGGACCATGATGTTGGTTATGAAGGATTGAACTTGGAGAAGATGTTTGTGATTCAC

Fln Alignment:

G5KS2UX02FYUVN___SFDADNPTHRYRYLDTSSQWFVRPVLETHGWDHDVGYEGLNLEKMFVI
Q9LUS2_______________SFDSDNPTHRYRYLDTSNQWLVRPVLETHGWDHDIGYEGVNAERLFVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain