SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60904

Length: 152 nt

UniGene Fasta

>sp_v3.0_unigene60904
AATGTCTCCGCCAGATGGTCCGGATGGAATCCCTCTTAGTTATGAAATATTTGTGGCTCAGCGTTTAAATCCTATACAATTATTAATATGCCAGACAGCTGGTGATGCAAGGCTGACGATCCCTGTATCACTTGTGGAGAATCACCAGTCAT

Ace file of the UniGene sp_v3.0_unigene60904

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SY65_PHYPA	-	-	2.0e-10	68%
FL-Next	sp=Translocase of chloroplast 120, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%

Source	Gene names
Sma3	LOC_Os10g40110; OSJNBa0082M15.3; Os10g0548800; OsI_34561; OsJ_32367; PHYPADRAFT_188734; PHYPADRAFT_189669; PHYPADRAFT_216050; PHYPADRAFT_216964;

Source	GOs	Term	Type	e value	Identity
Sma3	viral envelope	GO:0019031	Cellular Component	0.0	-
Sma3	GTP binding	GO:0005525	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chloroplast protein import component Toc86/159	IPR005690	-	0.0	-
Sma3	AIG1	IPR006703	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16620.1	ATTOC120, TOC120 translocon outer complex protein 120 chr3:5658469-5661738 REVERSE LENGTH=1089	7.0e-12	59%
RefSeq	Arabidopsis thaliana	NP_188284.1	translocase of chloroplast 120 [Arabidopsis thaliana]	1.0e-11	59%
RefSeq	Populus trichocarpa	XP_002312976.1	predicted protein, partial [Populus trichocarpa]	8.0e-12	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LUS2

Fln msg: Distance to subject end: 454 aas, your sequence is shorter than subject: 50 - 1089

Fln protein: MSPPDGPDGIPLSYEIFVAQRLNPIQLLICQTAGDARLTIPVSLVENHQS

Protein Length: 51

Fln nts: AATGTCTCCGCCAGATGGTCCGGATGGAATCCCTCTTAGTTATGAAATATTTGTGGCTCAGCGTTTAAATCCTATACAATTATTAATATGCCAGACAGCTGGTGATGCAAGGCTGACGATCCCTGTATCACTTGTGGAGAATCACCAGTCAT

Fln Alignment:

G5KS2UX02FQSYG___SPPDGPDGIPLSYEIFVAQRLNPIQLLICQTAGDARLTIPVSLVENHQS
Q9LUS2_______________APPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRLMNPVSLVENHSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain