SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59980

Length: 279 nt

UniGene Fasta

>sp_v3.0_unigene59980
ATGGGTTACCAACAGAGGTTTTAGCAAAGCATCTTCCTGTAGACGTGATCAACAAAATCGATGAAATAAGAATGAAATCCAGCTATGGAAGACAGCTTATGCACGGTAGCGACATGAGCATGAGCAGCTCAATTGAGGATCAGAGAATCAGAAGAATGCACCGAGCTCTAGACTCTTCTGATGTAGAACTAGTAAGGCTAATGGTGATGGGAGAAGGCTTGAACTTGGACAAAGCTTTGGCATTACACTATGCAGTGGCCAACTGCAGCAGAGAAGTAG

Ace file of the UniGene sp_v3.0_unigene59980

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ankyrin repeat and BTB/POZ domain-containing protein [Arabidopsis thaliana] sp\|Q9ZVC2.1\|NPR5_ARATH RecName: Full=Regulatory protein NPR5; AltName: Full=BTB/POZ domain-containing protein NPR5; AltName: Full=Protein BLADE ON PETIOLE 2 gb\|AAC78536.1\| hypothe	-	-	1.0e-29	66%
FL-Next	sp=Regulatory protein NPR5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Sma3	BOP/NPR1/NIM1-like regulatory protein	-	-	4.556e-09	-

Source	Gene names
Sma3	At2g41370; At3g57130; BOP2; F24I3.210; GSVIVT00025314001; LOC_Os11g04600; LOC_Os12g04410; MtrDRAFT_AC147961g14v2; NPR5; Os01g0948900; Os11g0141900; Os12g0138500; OsI_05187; OsI_05192; OsI_35056; OsI_35064; OsJ_04757; OsJ_32922; P0466H10.44-1; PHYPADRAFT_1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	-
Sma3	proximal/distal pattern formation	GO:0009954	Biological Process	-
Sma3	meristem determinacy	GO:0010022	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	nectary development	GO:0010254	Biological Process	-
Sma3	flower morphogenesis	GO:0048439	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G41370.1	BOP2 Ankyrin repeat family protein / BTB/POZ domain-containing protein chr2:17238019-17240203 REVERSE LENGTH=491	4.0e-37	66%
RefSeq	Arabidopsis thaliana	NP_181668.1	ankyrin repeat and BTB/POZ domain-containing protein [Arabidopsis thaliana]	5.0e-37	66%
RefSeq	Populus trichocarpa	XP_002308905.1	BOP/NPR1/NIM1-like regulatory protein [Populus trichocarpa]	8.0e-37	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVC2

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 92 - 491

Fln protein: GLPTEVLAKHLPVDVINKIDEIRMKSSYGRQLMHGSDMSMSSSIEDQRIRRMHRALDSSDVELVRLMVMGEGLNLDKALALHYAVANCSREV

Protein Length: 93

Fln nts: ATGGGTTACCAACAGAGGTTTTAGCAAAGCATCTTCCTGTAGACGTGATCAACAAAATCGATGAAATAAGAATGAAATCCAGCTATGGAAGACAGCTTATGCACGGTAGCGACATGAGCATGAGCAGCTCAATTGAGGATCAGAGAATCAGAAGAATGCACCGAGCTCTAGACTCTTCTGATGTAGAACTAGTAAGGCTAATGGTGATGGGAGAAGGCTTGAACTTGGACAAAGCTTTGGCATTACACTATGCAGTGGCCAACTGCAGCAGAGAAGTAG

Fln Alignment:

F7JJN6E01BE4HV___GLPTEVLAKHLPVDVINKIDEIRMKSSYGRQLM----HGSDMSMSSSIEDQRIRRMHRALDSSDVELVRLMVMGEGLNLDKALALHYAVANCSREV
Q9ZVC2_______________GLPPEILAKHLPIDVVTKIEELRLKSSIARRSLMPHNHHHDLSVAQDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDESLALHYAVESCSREV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain