UniGene Name: sp_v3.0_unigene59773
Length: 233 nt
UniGene Fasta |
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>sp_v3.0_unigene59773
A |
Ace file of the UniGene sp_v3.0_unigene59773 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Rop4 small GTP binding protein n=8 Tax=Embryophyta RepID=Q9XF08_MAIZE | - | - | 4.0e-29 | 84% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 86% |
Sma3 | Putative rac protein | - | - | 2.588e-17 | - |
Source | ECs | Term | Type | e value | Identity |
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Sma3 | Sphingomyelin phosphodiesterase. | EC:3.1.4.12 | - | 6.548e-09 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Sphingolipid metabolism | 00600 | 6.548e-09 | % | |
Sma3 | Metabolic pathways | 01100 | 6.548e-09 | % |
Source | Gene names |
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Sma3 | ARAC1; ARAC10; ARAC11; ARAC2; ARAC3; ARAC4; ARAC5; ARAC6; ARAC7; ARAC8; ARAC9; ATGP2; ATGP3; At1g20090; At2g17800; At2g44690; At3g48040; At4g28950; At4g35020; At5g45970; At5g62880; F16B22.18; F25O24.70; GSVIVT00003019001; GSVIVT00014385001; GSVIVT00016143 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | intracellular | GO:0005622 | Cellular Component | 0.0 | - |
Sma3 | nucleolus | GO:0005730 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | spindle | GO:0005819 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | phragmoplast | GO:0009524 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | site of polarized growth | GO:0030427 | Cellular Component | 0.0 | - |
Sma3 | apical part of cell | GO:0045177 | Cellular Component | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | GTP binding | GO:0005525 | Molecular Function | 0.0 | - |
Sma3 | small GTPase mediated signal transduction | GO:0007264 | Biological Process | 0.0 | - |
Sma3 | negative regulation of abscisic acid mediated signaling pathway | GO:0009788 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Small GTPase superfamily | IPR001806 | - | 0.0 | - |
Sma3 | Small GTPase superfamily, Rho type | IPR003578 | - | 0.0 | - |
Sma3 | Small GTP-binding protein domain | IPR005225 | - | 0.0 | - |
Sma3 | IPR013753 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT5G45970.1 | ARAC2, RAC2, ROP7, ATRAC2, ATROP7 RAC-like 2 chr5:18643761-18645758 FORWARD LENGTH=201 | 6.0e-39 | 84% |
RefSeq | Arabidopsis thaliana | NP_199409.1 | Rac-like GTP-binding protein ARAC2 [Arabidopsis thaliana] | 7.0e-39 | 84% |
RefSeq | Populus trichocarpa | XP_002330667.1 | predicted protein [Populus trichocarpa] | 6.0e-39 | 84% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: A9NN97
Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 102 aas, your sequence is shorter than subject: 72 - 198
Fln protein:
M
Protein Length:
73
Fln nts:
A
Fln Alignment:
F7JJN6E01ECOE9___TCMLISYTSNTFPTDYVPTVFDNFSANVVVDGTSVNLGLWDTAGQEDYNRLRPLSYRGTDVLFSIFA-YQ*ASYEN
A9NN97_______________TCMLISYTSNTFPTDYVPTVFDNFSANVVVDGTSVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRASYEN
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain