SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59515

Length: 411 nt

UniGene Fasta

>sp_v3.0_unigene59515
AACGCTCTGGGGATTACAGCTATGTGCCTGCTATTCTGCATACCCTTGAAATATTTGGTGGTACCTTAGATGAACACATGCAGTTGCTTCTGCCTGCGCTTGTTCGGCTATTTAGACCAGACGCTTCTGATGCATCTGTGGAGATCAGACGTGCAGCTATTAAAACTCTCACAAAGCTTATTCCTCGTGTTCAGATATCTGGCCATGTATCGGCATTGGTCCATCCCTTAAAACTTGTACTTGATGGGAATGTAGATGAACTCAGAAAGGACGCTGTTGATGCTATCTGTGCATTAGCACAAGCATTGGGTGATGACTTTACCATTTTTGTTCCATCTACTCGGAAAATTCTGCTGCGGCATCGATTGCAGCATAAAGATTTTGATGATATTGAAGCTCGCCTACTTAGAC

Ace file of the UniGene sp_v3.0_unigene59515

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FKBP12-rapamycin complex-associated protein [Arabidopsis thaliana] sp\|Q9FR53.1\|TOR_ARATH RecName: Full=Serine/threonine-protein kinase TOR; AltName: Full=Protein TARGET OF RAPAMYCIN; Short=AtTOR gb\|AAG43423.1\|AF178967_1 pTOR [Arabidopsis thaliana] gb\|AEE3	-	-	0.0	69%
FL-Next	sp=Serine/threonine-protein kinase TOR; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Sma3	Target of rapamycin kinase	-	-	9.178e-09	-

Source	Gene names
Sma3	At1g50030; F2J10.9; GSVIVT00038610001; MICPUN_88899; OsI_19077; OsJ_17723; PHYPADRAFT_173356; POPTRDRAFT_1069777; POPTRDRAFT_1087408; RCOM_1704650; TOR;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Ribosomal protein L23/L25, conserved site	IPR001014	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding	IPR009076	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G50030.1	TOR target of rapamycin chr1:18522626-18539619 REVERSE LENGTH=2481	69%
RefSeq	Arabidopsis thaliana	NP_001117459.1	FKBP12-rapamycin complex-associated protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002300288.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FR53

Fln msg: Distance to subject end: 1335 aas, your sequence is shorter than subject: 136 - 2481

Fln protein: RSGDYSYVPAILHTLEIFGGTLDEHMQLLLPALVRLFRPDASDASVEIRRAAIKTLTKLIPRVQISGHVSALVHPLKLVLDGNVDELRKDAVDAICALAQALGDDFTIFVPSTRKILLRHRLQHKDFDDIEARLLR

Protein Length: 137

Fln nts: AACGCTCTGGGGATTACAGCTATGTGCCTGCTATTCTGCATACCCTTGAAATATTTGGTGGTACCTTAGATGAACACATGCAGTTGCTTCTGCCTGCGCTTGTTCGGCTATTTAGACCAGACGCTTCTGATGCATCTGTGGAGATCAGACGTGCAGCTATTAAAACTCTCACAAAGCTTATTCCTCGTGTTCAGATATCTGGCCATGTATCGGCATTGGTCCATCCCTTAAAACTTGTACTTGATGGGAATGTAGATGAACTCAGAAAGGACGCTGTTGATGCTATCTGTGCATTAGCACAAGCATTGGGTGATGACTTTACCATTTTTGTTCCATCTACTCGGAAAATTCTGCTGCGGCATCGATTGCAGCATAAAGATTTTGATGATATTGAAGCTCGCCTACTTAGAC

Fln Alignment:

F7QVD2L01BJZBK___RSGDYSYVPAILHTLEIFGGTLDEHMQLLLPALVRLFRPDASDASVEIRRAAIKTLTKLIPRVQISGHVSALVHPLKLVLDGNVDELRKDAVDAICALAQALGDDFTIFVPSTRKILLRHRLQHKDFDDIEARLLR
Q9FR53_______________RFNDYTYVPDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAP---VAIRRDAIKTLTRVIPCVQVTGHISALVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIESIHKLLLKHRLRHKEFEEIHARWRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain