SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59466

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene59466
ATGGGGACTATGAATTCACAGCTTTTGCAAATTTCTGTGCTCAGACCTAGCTGCGCATAGATTCTCGGTGGGGGAGATTTTGAAAATCTACGAACAGAATGACCGAACCCGTAGTACTCCATGAGGAAATTAAAACAGATAGACTCTCGGATGCAAAAGATGAAAGTTCGCAGGCCAAAATGTGC

Ace file of the UniGene sp_v3.0_unigene59466

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-MYB transcription factor MYB3 n=1 Tax=Pinus taeda RepID=Q27IN9_PINTA	-	-	3.0e-08	100%
FL-Next	tr=R2R3-MYB transcription factor MYB3; Pinus taeda (Loblolly pine).	-	-	0.0	100%

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q27IN9

Fln msg: Distance to subject end: 298 aas, your sequence is shorter than subject: 29 - 327

Fln protein: MTEPVVLHEEIKTDRLSDAKDESSQAKMC

Protein Length: 30

Fln nts: ATGGGGACTATGAATTCACAGCTTTTGCAAATTTCTGTGCTCAGACCTAGCTGCGCATAGATTCTCGGTGGGGGAGATTTTGAAAATCTACGAACAGA_-_ATGACCGAACCCGTAGTACTCCATGAGGAAATTAAAACAGATAGACTCTCGGATGCAAAAGATGAAAGTTCGCAGGCCAAAATGTGC

Fln Alignment:

F7QVD2L01DFOKH___MTEPVVLHEEIKTDRLSDAKDESSQAKMC
Q27IN9_______________MTEPVVLHEEIKTDRLSDAKDESSQAKMC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain