SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59171

Length: 358 nt

UniGene Fasta

>sp_v3.0_unigene59171
CATTGCCTTTTGAGGGTAAACCTGCTGGTGCTGATTACGGTGCCTAACCTGGCGGAGACATCAAGTGAGGCATGCAGCAGAGTCAGCTAGTCCACCAGGACTAAGGTGGTCAACCAGAGCTTACTGAGCTTATTGAAGACAAAATAAGTAATATGGCAGAACAAGAAGCCAAGGGATCTGAGTTTGAGAAGAAAGCAGACAAGAAGATACAAGGATGGTCGATTTTTGGTTCTAAATATGATGATGCTGCAGATTTATATGAGAAGGCTGGCAATTCCTACAAGCTTGCAAAATCTTGGGACAAAGCTGGATCAACATATATCAAGCTAGCAAATTGTCATTTAAAGCTAGGAAAGTA

Ace file of the UniGene sp_v3.0_unigene59171

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-soluble nsf attachment protein, putative n=1 Tax=Ricinus communis RepID=B9S4A1_RICCO	-	-	3.0e-24	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Alpha-soluble NSF attachment protein	-	-	3.403e-19	-

Source	Gene names
Sma3	ASNAP; ASNAP1; ASNAP2; At3g56190; At3g56450; B1446H11.22; F18O21_150; GSVIVT00029393001; GSVIVT00037437001; Os08g0282400; OsI_28603; OsI_28604; OsJ_26737; PHYPADRAFT_138553; PHYPADRAFT_159417; PHYPADRAFT_168994; PHYPADRAFT_55046; POPTRDRAFT_724356; POPTRD

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pterin-binding	IPR000489	-	-
Sma3	NSF attachment protein	IPR000744	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G56190.1	ALPHA-SNAP2, ASNAP alpha-soluble NSF attachment protein 2 chr3:20846119-20848356 REVERSE LENGTH=289	6.0e-27	69%
RefSeq	Arabidopsis thaliana	NP_191178.1	alpha-soluble NSF attachment protein 2 [Arabidopsis thaliana]	8.0e-27	69%
RefSeq	Populus trichocarpa	XP_002312193.1	predicted protein [Populus trichocarpa]	4.0e-28	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0M8

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 68 - 289

Fln protein: MAEQEAKGSEFEKKADKKIQGWSIFGSKYDDAADLYEKAGNSYKLAKSWDKAGSTYIKLANCHLKLGK

Protein Length: 69

Fln nts: CATTGCCTTTTGAGGGTAAACCTGCTGGTGCTGATTACGGTGCCTAACCTGGCGGAGACATCAAGTGAGGCATGCAGCAGAGTCAGCTAGTCCACCAGGACTAAGGTGGTCAACCAGAGCTTACTGAGCTTATTGAAGACAAAATAAGTAAT_-_ATGGCAGAACAAGAAGCCAAGGGATCTGAGTTTGAGAAGAAAGCAGACAAGAAGATACAAGGATGGTCGATTTTTGGTTCTAAATATGATGATGCTGCAGATTTATATGAGAAGGCTGGCAATTCCTACAAGCTTGCAAAATCTTGGGACAAAGCTGGATCAACATATATCAAGCTAGCAAATTGTCATTTAAAGCTAGGAAAGTA

Fln Alignment:

F7JJN6E01BMBTY___MAEQEAKGSEFEKKADKKIQGWSIFGSKYDDAADLYEKAGNSYKLAKSWDKAGSTYIKLANCHLKL
A9P0M8_______________MAEQEAKGSEFERKADKKIQGWSIFGSKYDDAAELYEKAGNSYKLAKSWDKAGSTYIKLANCHLKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain