SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58339

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene58339
TCTCCCTGATAGACCTCTCAGAACCCGAAGGCGCGAGCCGAACTGCGATGGTGGAAGCAATCGGCCGGGCATGTCGAGGATGGGGCTTCTTCTTGGTGAAGAACCATGGGGTTTCAGAGTCCACCATGGAAAACGAGATGCAAGTGGGGCGAGAATTTTTCCACCTGCCTACGGAGTAGAATATGCGCTACTTCTCAACGGACCCCAAATCTCGCATGCGCTACTCCACC

Ace file of the UniGene sp_v3.0_unigene58339

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-aminocyclopropane-1-carboxylate oxidase, putative n=1 Tax=Ricinus communis RepID=B9RMV2_RICCO	-	-	5.0e-14	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	GOs	Term	Type	e value	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P021

Fln msg: Distance to subject end: 228 aas, your sequence is shorter than subject: 76 - 368

Fln protein: SLIDLSEPEGASRTAMVEAIGRACRGWGFFLVKNHGVSESTMENEMQVGREFFHLPTE*NMRYFSTDPKSRMRYST

Protein Length: 77

Fln nts: TCTCCCTGATAGACCTCTCAGAACCCGAAGGCGCGAGCCGAACTGCGATGGTGGAAGCAATCGGCCGGGCATGTCGAGGATGGGGCTTCTTCTTGGTGAAGAACCATGGGGTTTCAGAGTCCACCATGGAAAACGAGATGCAAGTGGGGCGAGAATTTTTCCACCTGCCTACGGAGTAGAATATGCGCTACTTCTCAACGGACCCCAAATCTCGCATGCGCTACTCCACC

Fln Alignment:

F585NNT02I3PEY___LIDLSEPEGASRTAMVEAIGRACRGWGFFLVKNHGVSESTMENEMQVGREFFHLPTE*NMRYFSTDPKSRMRYST
A9P021_______________LIDLSELEGAGRSATVEAIGRACRDWGFFLVKNHGVSESTMENEMRVGREFFHLPTEEKMRYFSTDHKSRMRYAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain