SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58141

Length: 109 nt

UniGene Fasta

>sp_v3.0_unigene58141
CAAGCTCCACTATCAAGCAAGGCCGGCTTAGATAACGATCATTATGTAAATTGTAGAAATGGAAGATCACCCAAGGAGACCAGATGGTGGTTCCATGATGATACCGTGT

Ace file of the UniGene sp_v3.0_unigene58141

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=A9NKP2_PICSI	-	-	1.0e-07	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Ubiquitin carrier protein	-	-	1.752e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	3.789e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		3.789e-14	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		3.789e-14	%
Sma3	Ubiquitin--protein ligase.	EC:6.3.2.19	-	6.188e-11	-

Source	Gene names
Sma3	5A1A.8; At1g45050; At1g75440; At5g42990; F1B16.3; F27F5.13; GSVIVT00014543001; GSVIVT00036869001; LOC_Os03g47770; LOC_Os12g44000; MBD2.19; Os03g0681400; Os03g47770; Os12g0636800; OsI_13035; OsI_39266; OsJ_12122; OsJ_36999; PHYPADRAFT_221296; PHYPADRAFT_90

Source	GOs	Term	Type	Identity
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G42990.1	UBC18 ubiquitin-conjugating enzyme 18 chr5:17244206-17245904 REVERSE LENGTH=161	9.0e-12	85%
RefSeq	Arabidopsis thaliana	NP_565110.1	putative ubiquitin-conjugating enzyme E2 16 [Arabidopsis thaliana]	1.0e-11	85%
RefSeq	Populus trichocarpa	XP_002310827.1	predicted protein [Populus trichocarpa]	4.0e-12	88%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKP2

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 36 - 166

Fln protein: QAPLSSKAGLDNDHYVNCRNGRSPKETRWWFHDDTV

Protein Length: 37

Fln nts: CAAGCTCCACTATCAAGCAAGGCCGGCTTAGATAACGATCATTATGTAAATTGTAGAAATGGAAGATCACCCAAGGAGACCAGATGGTGGTTCCATGATGATACCGTGT

Fln Alignment:

F585NNT02JLONT___DNDHYV-NCRNGRSPKETRWWFHDDTV
A9NKP2_______________DNDQYVKNCRNGRSPKETRWWFHDDTV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain