SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57721

Length: 384 nt

UniGene Fasta

>sp_v3.0_unigene57721
ATGGGGACTGTGTTTTTCAGTTTTGGCTCATTTTCTTAACGCGATTGCTGTAATCATTTCCGTTTGATTTCCTTTAGGTTGTGTATTGTGTTGATTTCGTTTAAAGATGCAGATATTCGTGAAGACGTTGACCGGTAAGACCATAGCCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAACAGCGTCTCATTTTTGTCGGTAAACAGTTGGAAGATGGACGCACTCTAGCCGACTACAACATCCAGAAGGAAGGGATTACCTCCTGATCAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGACTATAACATCCAGA

Ace file of the UniGene sp_v3.0_unigene57721

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG5272 Ubiquitin	-	-	3.0e-28	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	AT5G03240; At1g55060; At2g36170; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; B1472F02.6; EgUbi; FUBI1; GSVIVT00006610001; GSVIVT00028185001; GSVIVT00035709001; GSVIVT00037199001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; MICPUCDRAFT_17541; MICP

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52590.1	UBQ1, EMB2167, ERD16, HAP4 ubiquitin extension protein 1 chr3:19505668-19506681 FORWARD LENGTH=128	1.0e-36	96%
RefSeq	Arabidopsis thaliana	NP_566969.1	60S ribosomal protein L40-2 [Arabidopsis thaliana]	2.0e-36	96%
RefSeq	Populus trichocarpa	XP_002301663.1	predicted protein [Populus trichocarpa]	4.00001e-41	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP57

Fln msg: Overlapping hits, possible frame ERROR between 298 and 294, Distance to subject end: 64 aas, your sequence is shorter than subject: 93 - 128

Fln protein: MQIFVKTLTGKTIALEVESSDTIDNVKAKIQDKEGIPPDQQRLIFVGKQLEDGRTLADYNIQxxxGLPPDQQRLIFAGKQLEDGRTLADYNIQ

Protein Length: 94

Fln nts: ATGGGGACTGTGTTTTTCAGTTTTGGCTCATTTTCTTAACGCGATTGCTGTAATCATTTCCGTTTGATTTCCTTTAGGTTGTGTATTGTGTTGATTTCGTTTAAAG_-_ATGCAGATATTCGTGAAGACGTTGACCGGTAAGACCATAGCCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAACAGCGTCTCATTTTTGTCGGTAAACAGTTGGAAGATGGACGCACTCTAGCCGACTACAACATCCAGxxxxxxxxxGGATTACCTCCTGATCAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGACTATAACATCCAGA

Fln Alignment:

F5X2MQL01C2YT1___MQIFVKTLTGKTIALEVESSDTIDNVKAKIQDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
B8LP57_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain