SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57295

Length: 145 nt

UniGene Fasta

>sp_v3.0_unigene57295
CCCTCTTCACACACACTCCCGGCCTCCGCGTCGTAATACCCCGCTCACCAGTCCAGGCGAAAGGCCTCCTGCTATCCGCGATCCGCAGCCAGGACCCTGTCATCTTCATGGAGCCCAAGATACTCTACCGCGCTGCCGTCGAGCA

Ace file of the UniGene sp_v3.0_unigene57295

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial n=2 Tax=Pyrenophora RepID=B2W984_PYRTR	-	-	3.0e-18	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Gene names
Sma3	At1g55510; At3g13450; BCDH beta1; GSVIVT00024844001; OSJNBa0050F10.25; Os07g0170100; OsJ_23251; PHATRDRAFT_11021; PHYPADRAFT_138954; POPTRDRAFT_1074695; RCOM_0342870; T5A14.9; THAPSDRAFT_32067; VITISV_037525; din4;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	GO:0003863	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13450.1	DIN4 Transketolase family protein chr3:4382340-4384295 REVERSE LENGTH=358	1.0e-15	69%
RefSeq	Arabidopsis thaliana	NP_187954.1	2-oxoisovalerate dehydrogenase E1 component, beta subunit [Arabidopsis thaliana]	2.0e-15	69%
RefSeq	Populus trichocarpa	XP_002304849.1	predicted protein [Populus trichocarpa]	2.0e-15	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU2

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 47 - 378

Fln protein: LFTHTPGLRVVIPRSPVQAKGLLLSAIRSQDPVIFMEPKILYRAAVE

Protein Length: 48

Fln nts: CCCTCTTCACACACACTCCCGGCCTCCGCGTCGTAATACCCCGCTCACCAGTCCAGGCGAAAGGCCTCCTGCTATCCGCGATCCGCAGCCAGGACCCTGTCATCTTCATGGAGCCCAAGATACTCTACCGCGCTGCCGTCGAGCA

Fln Alignment:

F5V9AAZ01EBCW1___PGLRVVIPRSPVQAKGLLLSAIRSQDPVIFMEPKILY
B8LPU2_______________PGLKVLTPYSAEDSRGLMKAAIRDPDPVIFLENELLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain