SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57255

Length: 135 nt

UniGene Fasta

>sp_v3.0_unigene57255
GTTGGGAGGCTTATCGCAAGTTGAAAGAAAAGCAAAAGATAAAGAGGATGATTTAGCAAATCAAGATAAAGTTATGGAGGAGACTAAAGATAAGAGGAATGCTGTGGAGTCTTATGTATACGATATGCGTAATAA

Ace file of the UniGene sp_v3.0_unigene57255

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock 70 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9SQC9_RICCO	-	-	7.0e-08	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Putative heat-shock protein	-	-	4.309e-08	-

Source	Gene names
Sma3	At1g79920; At1g79920/F19K16.12; At1g79930; F18B13.1; F19K16.11; GSVIVT00034421001; OJ1174_D05.17; Os01g0180800; OsI_00654; OsJ_00630; P0666G04.5; RCOM_0980870;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	0.0	-
Sma3	Heat shock protein 70	IPR013126	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79930.1	HSP91 heat shock protein 91 chr1:30063781-30067067 REVERSE LENGTH=831	7.0e-12	68%
RefSeq	Arabidopsis thaliana	NP_001031305.1	heat shock protein 91 [Arabidopsis thaliana]	9.0e-12	68%
RefSeq	Populus trichocarpa	XP_002304185.1	predicted protein [Populus trichocarpa]	3.0e-11	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQU3

Fln msg: Distance to subject end: 205 aas, your sequence is shorter than subject: 44 - 388

Fln protein: LGGLSQVERKAKDKEDDLANQDKVMEETKDKRNAVESYVYDMRN

Protein Length: 45

Fln nts: GTTGGGAGGCTTATCGCAAGTTGAAAGAAAAGCAAAAGATAAAGAGGATGATTTAGCAAATCAAGATAAAGTTATGGAGGAGACTAAAGATAAGAGGAATGCTGTGGAGTCTTATGTATACGATATGCGTAATAA

Fln Alignment:

F5V9AAZ01CQ62T___RKAKDKEDDLANQDKVMEETKDKRNAVESYVYDMRN
C0PQU3_______________QKATDEEFEMALQDRVMEETKEKKNAVEAYVYDMRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain