SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56719

Length: 310 nt

UniGene Fasta

>sp_v3.0_unigene56719
ATGGGCTTCTGCCTAGGTGCTAGGTTTGAGAGGTAATGGTTTATCTTAAACAATCTAGATTTGTACCGAATCTCATTCCTTTGAAACTCAGACTACAGCAGCTGGACGCTGGGATTGATTTTGGTCACTTTATCGGCCTCTTTGAGAAGTTTGAATGAGATTGGGATTTTCTTCTTCTCAATCTACCTGGTTGCTCTGGGGCAAGGAGGCCACAAACCCTGTTTAGAAGCATTTGGTGCAGATCAGTTTGAAGAGGACTACCCGGTAGAGAAGAAGCATAGGAGTTCATTCTTCAACTATTGGAATTGTG

Ace file of the UniGene sp_v3.0_unigene56719

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proton-dependent oligopeptide transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MWD3_POPTR	-	-	1.0e-15	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Oligopeptide transporter, putative	-	-	7.546e-07	-

Source	Gene names
Sma3	At1g22550; At1g72115; At1g72120; F12K8.11; F12K8.12; F28P5.2; GSVIVT00001822001; GSVIVT00001842001; RCOM_1332930; VITISV_031692;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72125.1	Major facilitator superfamily protein chr1:27134168-27136257 FORWARD LENGTH=561	7.0e-19	54%
RefSeq	Arabidopsis thaliana	NP_001117585.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	9.0e-19	54%
RefSeq	Populus trichocarpa	XP_002327271.1	proton-dependent oligopeptide transporter, partial [Populus trichocarpa]	3.0e-20	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW85

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 395 aas, your sequence is shorter than subject: 103 - 574

Fln protein: MGFCLGARFER*WFILNNLDLYRISFL*NSDYSSWTLGLILVTLSASLRSLNEIGIFFFSIYLVALGQGGHKPCLEAFGADQFEEDYPVEKKHRSSFFNYWNC

Protein Length: 104

Fln nts: ATGGGCTTCTGCCTAGGTGCTAGGTTTGAGAGGTAATGGTTTATCTTAAACAATCTAGATTTGTACCGAATCTCATTCCTTTGAAACTCAGACTACAGCAGCTGGACGCTGGGATTGATTTTGGTCACTTTATCGGCCTCTTTGAGAAGTTTGAATGAGATTGGGATTTTCTTCTTCTCAATCTACCTGGTTGCTCTGGGGCAAGGAGGCCACAAACCCTGTTTAGAAGCATTTGGTGCAGATCAGTTTGAAGAGGACTACCCGGTAGAGAAGAAGCATAGGAGTTCATTCTTCAACTATTGGAATTGTG

Fln Alignment:

F51TW9002H8I7J___WTLGLILVTLSASLRSLNEIGIFFFSIYLVALGQGGHKPCLEAFGADQFEEDYPVEKKHRSSFFNYWNC
A9NW85_______________YLLGLILVTLSASLKSLNQIGFFFFSIYLVALGQGGHKPCLEAFGADQFEEDDPIEKKHKSSFFNYWYC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain