SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56647

Length: 80 nt

UniGene Fasta

>sp_v3.0_unigene56647
AGGAGTAGCTATGAACCCTGTAGACCATCCTCATGGAGGTGGGGAAGGAAGAACCCCAATTGGCAGGAAAAACCTAGTGA

Ace file of the UniGene sp_v3.0_unigene56647

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L2 (Fragment) n=3 Tax=Pinaceae RepID=Q14EM9_PSEMZ	-	-	2.0e-06	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Ribosomal protein L2	-	-	4.232e-13	-

Source	Gene names
Sma3	rpl2; rpl2-A; rpl2-B;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L2	IPR002171	-	-
Sma3	Ribosomal protein L2, bacterial-type	IPR005880	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NL32

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 26 - 140

Fln protein: GVAMNPVDHPHGGGEGRTPIGRKNLV

Protein Length: 27

Fln nts: AGGAGTAGCTATGAACCCTGTAGACCATCCTCATGGAGGTGGGGAAGGAAGAACCCCAATTGGCAGGAAAAACCTAGTGA

Fln Alignment:

F51TW9002G3OZP___GVAMNPVDHPHGGGEGRTPIGRKNLV
A9NL32_______________GVAMNPVDHPHGGGEGRTPIGRKKPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain