SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56467

Length: 90 nt

UniGene Fasta

>sp_v3.0_unigene56467
TTCCTTATGTACATGGTTTCATGTTACATGCAACAATGATAACAGTGTGATAAGAGTGGACTTGGGAATGCAACAACTTTCTGGTTCATT

Ace file of the UniGene sp_v3.0_unigene56467

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Somatic embryogenesis receptor kinase n=1 Tax=Cocos nucifera RepID=Q5S1N9_COCNU	-	-	7.0e-07	88%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	0.0	92%
Sma3	Somatic embryogenesis receptor-like kinase 2	-	-	6.802e-08	-

Source	Gene names
Sma3	AT1G34210; AT1G71830; At1g34210; BISERK1; F14O23.21; F23M19.11; H0523F07.15; LRR-RLK; OSJNBa0036B21.13; OSJNBa0054L03.30; Os04g0457800; Os08g0174700; OsI_16145; OsI_28003; OsJ_15037; OsJ_26221; OsSERK1; PHYPADRAFT_121223; PHYPADRAFT_186598; POPTRDRAFT_111

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5FY57

Fln msg: Distance to subject end: 546 aas, your sequence is shorter than subject: 29 - 626

Fln protein: SLCTWFHVTCNNDNSVIRVDLGMQQLSGS

Protein Length: 30

Fln nts: TTCCTTATGTACATGGTTTCATGTTACATGCAACAATGATAACAGTGTGATAAGAGTGGACTTGGGAATGCAACAACTTTCTGGTTCATT

Fln Alignment:

F51TW9001EABWJ___CTWFHVTCNNDNSVIRVDLGMQQLSGS
D5FY57_______________CTWFHVTCNNDNSVIRVDLGNAQLSGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain