SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56039

Length: 218 nt

UniGene Fasta

>sp_v3.0_unigene56039
CATGAATCCAATTAGGTGGTGGATTTGTCATGGAGCAGATGGTGTACATTTGCAAAACCTTGCCATTCGTATTCTTTCACAAGTGGCAAGCTCTTCATCAGCAGAAAGGAATTGGAGCACTTATGGTTTTATTCATTCGGTGAAGCGCAATAGGTTGGGCTCACAGAAGGCAGAGGATCTTGTTTATGTGCACTTCAACCTTCGCCTTCCATCTCGTA

Ace file of the UniGene sp_v3.0_unigene56039

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dimer_Tnp_hAT domain containing protein	-	-	1.0e-09	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	VITISV_009724; VITISV_021604;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311919.1	predicted protein [Populus trichocarpa]	5.0e-15	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8W4

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 72 - 478

Fln protein: MNPIRWWICHGADGVHLQNLAIRILSQVASSSSAERNWSTYGFIHSVKRNRLGSQKAEDLVYVHFNLRLPSR

Protein Length: 73

Fln nts: CATGAATCCAATTAGGTGGTGGATTTGTCATGGAGCAGATGGTGTACATTTGCAAAACCTTGCCATTCGTATTCTTTCACAAGTGGCAAGCTCTTCATCAGCAGAAAGGAATTGGAGCACTTATGGTTTTATTCATTCGGTGAAGCGCAATAGGTTGGGCTCACAGAAGGCAGAGGATCTTGTTTATGTGCACTTCAACCTTCGCCTTCCATCTCGTA

Fln Alignment:

F51TW9001BB0OT___WWICHGADGVHLQNLAIRILSQVASSSSAERNWSTYGFIHSVKRNRLGSQKAEDLVYVHFNLRL
D5A8W4_______________WWENYGATTPILQKMAIRVLSQTCSSSGCERNWSVFEKIHTKKRNRLDTSCLNDLVYVHYNLRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain