SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55895

Length: 348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene55895
GTGAAAATATTATGACACCTGGATTACTTCACCCATTAAACATTCCGAATCAGAAATGGGAAGAAATATTGGTGGACTTTATTGAAAGATTAATCGTATCCAAAGGCAAGGACAAGATTTTCGTAGTGGTCGACAGACTTACCAAATATGCCCACTTTATGGCAATAAAGAAATCAGACTCAGCTAAACAAATTGCTGAAATATTTTGCAAAAATATATATAGGTCACACGGTTTTCCGAAAGTCACTGTGAGTGATAGAGATGCCAAATTCAAGGGTAATTTATGAAGGAATTGTTCAACCACATAGGAACCTACCTAAATATGAATTCTGCTTATCACCCTCAAAC

Ace file of the UniGene sp_v3.0_unigene55895 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q94LP8_ORYSJ	-	-	3.0e-21	51%
FL-Next	tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice).	-	-	0.0	53%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	7.228e-11	-

Source	Gene names
Sma3	B1168G10.5; B1234D02.1; H0306B06.3; H0425E08.11; H0502B11.9; H0522A01.6; H0807C06-H0308C08.3; H0820C10.2; LOC_Os03g26760; LOC_Os03g29790; LOC_Os03g34190; LOC_Os03g35430; LOC_Os03g41960; LOC_Os03g48990; LOC_Os03g49330; LOC_Os10g03250; LOC_Os10g06370; LOC_O

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	SNAP receptor activity	GO:0005484	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: H2KWP3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 190 aas, your sequence is shorter than subject: 95 - 1422

Fln protein: ENIMTPGLLHPLNIPNQKWEEILVDFIERLIVSKGKDKIFVVVDRLTKYAHFMAIKKSDSAKQIAEIFCKNIYRSHGFPKVTVSDRDAKFKGNL*

Protein Length: 96

Fln nts: GTGAAAATATTATGACACCTGGATTACTTCACCCATTAAACATTCCGAATCAGAAATGGGAAGAAATATTGGTGGACTTTATTGAAAGATTAATCGTATCCAAAGGCAAGGACAAGATTTTCGTAGTGGTCGACAGACTTACCAAATATGCCCACTTTATGGCAATAAAGAAATCAGACTCAGCTAAACAAATTGCTGAAATATTTTGCAAAAATATATATAGGTCACACGGTTTTCCGAAAGTCACTGTGAGTGATAGAGATGCCAAATTCAAGGGTAATTTATGAAGGAATTGTTCAACCACATAGGAACCTACCTAAATATGAATTCTGCTTATCACCCTCAAAC

Fln Alignment:

F5X2MQL01DZUMA___ENIMTPGLLHPLNIPNQKWEEILVDFIERLIVSKGKDKIFVVVDRLTKYAHFMAIKKSDSAKQIAEIFCKNIYRSHGFPKVTVSDRDAKFKGNL
H2KWP3_______________EHIHVPGLLDPLAIPDMAWSHITMDFIERLPISRGKDVILVVVDRLTKYAHFLALSHPYTVEQVVEVFMNNIHKLHGMPTAIITDRDRIFTSNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain