SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55221

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene55221
ATGGGATAGCATACAGAGACCTCAAACCTGAGAACATTCTCGTGCAAGCCAGCGGTCACATAATGCTTACAGACTTTGATCTCTCTACCAGGCTTTCGCTCAAGCATTTCACAACCCTTTTAGAAACTCCAAATGTACGTCAGCACAGACAGTCCAAGGGCGTGCACATTCCACACCTTAGACGTTCAATAAGTTCCTGCCTAAACCCATTACGTAGCCAGCCTGA

Ace file of the UniGene sp_v3.0_unigene55221

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T5H7_RICCO	-	-	5.0e-08	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Gene names
Sma3	At1g51170; At3g20830; B1394A07.1; GSVIVT00024645001; GSVIVT00034935001; LOC_Os03g44020; LOC_Os12g42020; OJ991113_30.20; OSIGBa0092O07.5; OSJNBa0038E17.2; OSJNBa0079M09.13; Os02g0603000; Os03g0642200; Os04g0304200; Os04g0488700; Os12g0614600; OsI_07968; Os

Source	GOs	Term	Type	Identity
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002326251.1	predicted protein, partial [Populus trichocarpa]	3.0e-11	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: Distance to subject end: 174 aas, your sequence is shorter than subject: 74 - 385

Fln protein: GIAYRDLKPENILVQASGHIMLTDFDLSTRLSLKHFTTLLETPNVRQHRQSKGVHIPHLRRSISSCLNPLRSQP

Protein Length: 75

Fln nts: ATGGGATAGCATACAGAGACCTCAAACCTGAGAACATTCTCGTGCAAGCCAGCGGTCACATAATGCTTACAGACTTTGATCTCTCTACCAGGCTTTCGCTCAAGCATTTCACAACCCTTTTAGAAACTCCAAATGTACGTCAGCACAGACAGTCCAAGGGCGTGCACATTCCACACCTTAGACGTTCAATAAGTTCCTGCCTAAACCCATTACGTAGCCAGCCTGA

Fln Alignment:

F51TW9002HGB6C___GIAYRDLKPENILVQASGHIMLTDFDLSTRLS
A9NPF9_______________GILYRDLKPENILLQADGHIMITDFDLSLMIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain