SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55129

Length: 113 nt

UniGene Fasta

>sp_v3.0_unigene55129
GTCTACATTGAAAATCAATACTTCTTGGGATCTTCTTACAACTGGTCATCTTACAAGACTGCAGGTGCAAACAATATAATCCATGGAATTGGCTTTGAAGATTGCCAGTAAAA

Ace file of the UniGene sp_v3.0_unigene55129

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phospholipase D beta 1 isoform 1b n=3 Tax=Gossypium hirsutum RepID=Q8H1U1_GOSHI	-	-	3.0e-06	81%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase D.	EC:3.1.4.4	-	4.894e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycerophospholipid metabolism	00564	4.894e-10	%
Sma3	Ether lipid metabolism	00565	4.894e-10	%
Sma3	Metabolic pathways	01100	4.894e-10	%

Source	Gene names
Sma3	GSVIVT00001073001; PHYPADRAFT_88138; PLD; POPTRDRAFT_730956; RCOM_1613030; pldb;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	phospholipase D activity	GO:0004630	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phosphatidylcholine metabolic process	GO:0046470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 254 aas, your sequence is shorter than subject: 37 - 861

Fln protein: VYIENQYFLGSSYNWSSYKTAGANNIIHGIGFEDCQ*

Protein Length: 38

Fln nts: GTCTACATTGAAAATCAATACTTCTTGGGATCTTCTTACAACTGGTCATCTTACAAGACTGCAGGTGCAAACAATATAATCCATGGAATTGGCTTTGAAGATTGCCAGTAAAA

Fln Alignment:

F51TW9001BLF5N___VYIENQYFLGSSYNWSSYKTAGANNII
B8LQ49_______________IYIENQYFVGSSYNWPSYKNAGAHNLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain