SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55029

Length: 427 nt

UniGene Fasta

>sp_v3.0_unigene55029
GTACAAGATCTAATTCAAAAGCATGAAAAGGTATTTCAAGACCTGCCTATGAAAATGCCTCCCAACAGGGAAATTGAGCATACAATAGAAGTTAAAGCAGGGTCAGACCCCGTCAACATCAAGCCGTATCGATATCCACATCACCAAAAGACAAAAATTGAGAGATTAATCCAAGACCTTTTAAAGTGTGGGATCATCTCGAAAAATAAAGTCTATATGCTGCTCCAGTGCTATTGGTAAGGAAGAAGGATGGTTCATTCATGCTATGCATTGACTATAGAGGATTAAACAAAATAATGATTAAAAACAATTCCCCATCCCCTTTTATCGAAGAAATGTTGGATGAACTATATGGCGCAAAATACTTCTCAAAATTGGACTTAAGGTCAGGCTATTACCAAATCAGAATCATGTTGGAAGAGATACC

Ace file of the UniGene sp_v3.0_unigene55029

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO	-	-	8.0e-33	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Retrotransposon protein, putative, unclassified	-	-	9.827e-20	-

Source	Gene names
Sma3	At2g04670; At2g10780; B1160F02.12; F23H6.1; H0124B04.16; H0321H01.8; H0502G05.12; H0502G05.6; H0613A10.2; LOC_Os03g04860; LOC_Os03g05340; LOC_Os03g06110; LOC_Os03g07050; LOC_Os03g10000; LOC_Os03g26020; LOC_Os03g36290; LOC_Os03g59810; LOC_Os03g61190; LOC_O

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, W1: There is no M at the beginning,

Fln protein: SLYAAPVLLVRKKDGSFMLCIDYRGLNKIMIKNNSPSPFIEEMLDELYGAKYFSKLDLRSGYYQIRIMLEEI

Protein Length: 73

Fln nts: GTACAAGATCTAATTCAAAAGCATGAAAAGGTATTTCAAGACCTGCCTATGAAAATGCCTCCCAACAGGGAAATTGAGCATACAATAGAAGTTAAAGCAGGGTCAGACCCCGTCAACATCAAGCCGTATCGATATCCACATCACCAAAAGACAAAAATTGAGAGATTAATCCAAGACCTTTTAAAGTGTGGGATCATCTCGAAAAATAAAGTCTATATGCTGCTCCAGTGCTATTGGTAAGGAAGAAGGATGGTTCATTCATGCTATGCATTGACTATAGAGGATTAAACAAAATAATGATTAAAAACAATTCCCCATCCCCTTTTATCGAAGAAATGTTGGATGAACTATATGGCGCAAAATACTTCTCAAAATTGGACTTAAGGTCAGGCTATTACCAAATCAGAATCATGTTGGAAGAGATACC

Fln Alignment:

F51TW9001CPSCW___LYAAPVLLVRKKDGSFMLCIDYRGLNKIMIKNNSPSPFIEEMLDELYGAKYFSKLDLRSGYYQIRI
A9NWN2_______________MYSTPIILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDELYGTMYFLELDQKSNYYHIRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain