SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54708

Length: 117 nt

UniGene Fasta

>sp_v3.0_unigene54708
GAAAAGTATAGATCAACACACTTGGTCTTTCTTTAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTGCAGGCCTTGTCGCATCATTAAAATTGACTGGTGGAACATTGGCTGA

Ace file of the UniGene sp_v3.0_unigene54708

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Malic enzyme n=1 Tax=Picea sitchensis RepID=B8LRQ8_PICSI	-	-	3.0e-07	96%
FL-Next	sp=Malic enzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Malic enzyme	-	-	5.329e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.4-	-	4.001e-10	-

Source	Gene names
Sma3	CytMeA; CytMeB; ME; ME1; MOD1; MODA;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	malic enzyme activity	GO:0004470	Molecular Function	-
Sma3	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity	GO:0004473	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Malic oxidoreductase	IPR001891	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Malic enzyme, N-terminal	IPR012301	-	-
Sma3	Malic enzyme, NAD-binding	IPR012302	-	-
Sma3	Malic enzyme, conserved site	IPR015884	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRQ8

Fln msg: Distance to subject end: 260 aas, your sequence is shorter than subject: 38 - 581

Fln protein: KSIDQHTWSFFNDDIQGTASVVLAGLVASLKLTGGTLA

Protein Length: 39

Fln nts: GAAAAGTATAGATCAACACACTTGGTCTTTCTTTAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTGCAGGCCTTGTCGCATCATTAAAATTGACTGGTGGAACATTGGCTGA

Fln Alignment:

F5V9AAZ02FPG5H___FNDDIQGTASVVLAGLVASLKLTGGTLA
B8LRQ8_______________FNDDIQGTASVVLSGLVASLKLTGGTLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain