SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54282

Length: 193 nt

UniGene Fasta

>sp_v3.0_unigene54282
GTCTTGACTTGGGCTATTGCTCCAGTCTGAAGACACTCCCAGACTCAGTGGGGAATCTGTCGGGCCTCCAAAGTCTTCAGTTGAACCTCTGCCGCGGTCTGCAAAGACTGCCAGACTCAGTGGGGAACCTATCGGGCCTCCAAAGTCTTTACTTGAGCTACTGCGCCAGTCTGCAGACACTCCCAGACTCAAT

Ace file of the UniGene sp_v3.0_unigene54282

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tir-nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9MZW4_POPTR	-	-	5.0e-08	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%

Source	Gene names
Sma3	At1g69550; F10D13_24; POPTRDRAFT_595612;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002328446.1	tir-nbs-lrr resistance protein [Populus trichocarpa]	8.0e-12	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 63 - 1071

Fln protein: LDLGYCSSLKTLPDSVGNLSGLQSLQLNLCRGLQRLPDSVGNLSGLQSLYLSYCASLQTLPDS

Protein Length: 64

Fln nts: GTCTTGACTTGGGCTATTGCTCCAGTCTGAAGACACTCCCAGACTCAGTGGGGAATCTGTCGGGCCTCCAAAGTCTTCAGTTGAACCTCTGCCGCGGTCTGCAAAGACTGCCAGACTCAGTGGGGAACCTATCGGGCCTCCAAAGTCTTTACTTGAGCTACTGCGCCAGTCTGCAGACACTCCCAGACTCAAT

Fln Alignment:

F51TW9001CXVPR___LDLGYCSSLKTLPDSVXXXXXXXXXXXXXCRGLQRLPDSVGNLSGLQSLYLSYCASLQTLPDS
C0PQE2_______________LALGWCSTLQTLPDSVGNLTGLQTLDLIECSTLQTLPDSVGNLTGLQTLYLSRCSTLQTLPDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain