SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54263

Length: 262 nt

UniGene Fasta

>sp_v3.0_unigene54263
TCAAAGGCCAGGAATCCATCCGTAAAGCGAGTATTCCACCACAGATGTGGCTTCCAGCTAGTGGGATTATTATGAATAATGACATTGGTGATGCAAATCCAGAAGCCGCAAATCCAGAAGCCGCTGCTCGTATAGCTTACTGAGAATGATTCCTATGTGATGTCTGCGTCCGGTGGCAAGGTCTCCTTGTTCAATATGATGACATTTAAGGTCATGACAACTTTCATACCACTTCCTGCAGCCACATTTCTGGCTTTCCACG

Ace file of the UniGene sp_v3.0_unigene54263

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like [Oryza sativa Japonica Group] gb\|EAZ41606.1\| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group]	-	-	8.0e-17	88%
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Sma3	WD-repeat protein, putative	-	-	1.703e-09	-

Source	Gene names
Sma3	AT3G15880; At1g15750; At1g80490; At3g15880; At5g27030; CTV.2; F15P11.3; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; LOC_Os03g14980; MtrDRAFT_AC147963g18v2; OJ1115_B04.1; Os01g0254100; Os03g0254700

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15750.1	WSIP1, TPL Transducin family protein / WD-40 repeat family protein chr1:5415086-5420359 REVERSE LENGTH=1131	5.0e-19	81%
RefSeq	Arabidopsis thaliana	NP_563981.1	protein TOPLESS [Arabidopsis thaliana]	7.0e-19	81%
RefSeq	Populus trichocarpa	XP_002308068.1	predicted protein [Populus trichocarpa]	5.0e-20	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94AI7

Fln msg: Separated hits, possible frame ERROR between 92 and 136, Distance to subject end: 246 aas, your sequence is shorter than subject: 87 - 1131

Fln protein: KGQESIRKASIPPQMWLPASGIIMNNDIGxxxxxxxxxxxxxxxxLTENDSYVMSASGGKVSLFNMMTFKVMTTFIPLPAATFLAFH

Protein Length: 88

Fln nts: TCAAAGGCCAGGAATCCATCCGTAAAGCGAGTATTCCACCACAGATGTGGCTTCCAGCTAGTGGGATTATTATGAATAATGACATTGGTGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTTACTGAGAATGATTCCTATGTGATGTCTGCGTCCGGTGGCAAGGTCTCCTTGTTCAATATGATGACATTTAAGGTCATGACAACTTTCATACCACTTCCTGCAGCCACATTTCTGGCTTTCCACG

Fln Alignment:

F51TW9001EMCYC___ASIPPQMWLPASGIIMNNDIGDxxxxxxxxxxxxxxxLTENDSYVMSASGGKVSLFNMMTFKVMTTFI-PLPAATFLAFH
Q94AI7_______________ASLPPQQWQPASGILMTNDVAExxxxxxxxxxxxxxxLSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain