SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54160

Length: 432 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54160
ATCAGCTGTATGAAAATCTGGTCTGGCTTTTCCTTGTGGGTGCACTTCTCCCTGTGCCATTTTGGATTTTGAGTAAGCTGTTCCCCAAGCAAAAATGGATTTCACAGATAAACATGCCTGTCCTTACATATGGGTTCGCTGGCATGCCTCCTGCCACTCCTGCCAACATTGCTTCTTGGATCATAACAGGTACTATCTTCAATTATTTTGTATTCCGCTACAGGAAGAGGTGGTGGCAGCGATACAATTATGTGCTTTCTGCAGCCCTAGATGCTGGTACAGCATTTATGGGAGTGCTGTTGTACTTCGCACTTGGGTAATGCAGCAGAAGAATTTAACCTGGTGGGGACAGAGCTGGACCATTGCCCACTTGCTTCCTGTCCAACTGCCCCGGCAATTAAAAGTTGTCAAGGGATGTCCAGTGTTCTGATT

Ace file of the UniGene sp_v3.0_unigene54160 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oligopeptide transporter 3 n=5 Tax=Brassicaceae RepID=OPT3_ARATH	-	-	0.0	79%
FL-Next	sp=Oligopeptide transporter 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%
Sma3	Oligopeptide transporter OPT family	-	-	9.03e-25	-

Source	Gene names
Sma3	At1g09930; At4g10770; At4g16370; At4g26590; At4g27730; At5g53520; At5g55930; At5g64410; B1053A04.20-1; F21M12.32; FCAALL.72; GSVIVT00000539001; GSVIVT00004656001; GSVIVT00004853001; GSVIVT00005733001; GSVIVT00008168001; GSVIVT00015060001; GSVIVT0001506100

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oligopeptide transporter activity	GO:0015198	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16370.1	ATOPT3, OPT3 oligopeptide transporter chr4:9247514-9250071 REVERSE LENGTH=737	79%
RefSeq	Arabidopsis thaliana	NP_567493.5	oligopeptide transporter [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002323123.1	oligopeptide transporter OPT family [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: O23482

Fln msg: Overlapping hits, possible frame ERROR between 314 and 313, STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 144 - 737

Fln protein: QLYENLVWLFLVGALLPVPFWILSKLFPKQKWISQINMPVLTYGFAGMPPATPANIASWIITGTIFNYFVFRYRKRWWQRYNYVLSAALDAGTAFMGVLLYFAxxGNAAEEFNLVGTELDHCPLASCPTAPAIKSCQGMSSVLI

Protein Length: 145

Fln nts: ATCAGCTGTATGAAAATCTGGTCTGGCTTTTCCTTGTGGGTGCACTTCTCCCTGTGCCATTTTGGATTTTGAGTAAGCTGTTCCCCAAGCAAAAATGGATTTCACAGATAAACATGCCTGTCCTTACATATGGGTTCGCTGGCATGCCTCCTGCCACTCCTGCCAACATTGCTTCTTGGATCATAACAGGTACTATCTTCAATTATTTTGTATTCCGCTACAGGAAGAGGTGGTGGCAGCGATACAATTATGTGCTTTCTGCAGCCCTAGATGCTGGTACAGCATTTATGGGAGTGCTGTTGTACTTCGCAxxxxxxGGTAATGCAGCAGAAGAATTTAACCTGGTGGGGACAGAGCTGGACCATTGCCCACTTGCTTCCTGTCCAACTGCCCCGGCAATTAAAAGTTGTCAAGGGATGTCCAGTGTTCTGATT

Fln Alignment:

F5X2MQL01EZHPJ___LYENLVWLFLVGALLPVPFWILSKLFPKQKWISQINMPVLTYGFAGMPPATPANIASWIITGTIFNYFVFRYRKRWWQRYNYVLSAALDAGTAFMGVLLYFAxGNAAEEFNLVGTELDHCPLASCPTAPAIKS
O23482_______________MYRNLVWLFLIGAVLPVPVWALSKIFPNKKWIPLINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHKRWWQKYNYVLSAALDAGTAFMGVLLFFAxQNAGHDLKWWGTEVDHCPLASCPTAPGIKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain