SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54151

Length: 354 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54151
GGGCACTAAAACCTGGACTGGATGAAGACTCAATACATGATATTCTTGTTGCATTTCAAAATGCCACGGAAATTGCTGTTGAATGGTCAAAAGCATGGCACAAGTGGACATTGTTTAACACTGCAGTGATGTCCCATTACATCCATAAAGGCCCTCCTGCTCTCACCAGTCAGTATGTTGTTGAAGCTATAAAAGGATATTTTCGTTCAATAGCATTTGGCGCAAATACAAAAGGGGGAGATGATTTGGCAAAGGTTGGAGTTCACACGCCTCAACGATTTGGTGTACGTGCATTACAACATCCGACTTCGAGTGAGGCAAATAGAATCACCAGTGGATCCAGATGCCATTTCC

Ace file of the UniGene sp_v3.0_unigene54151 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fkbp-rapamycin associated protein, putative n=1 Tax=Ricinus communis RepID=B9RWX6_RICCO	-	-	3.0e-24	64%
FL-Next	sp=Serine/threonine-protein kinase TOR; Oryza sativa subsp. japonica (Rice).	-	-	0.0	58%

Source	Gene names
Sma3	At1g50030; F2J10.9; GSVIVT00038610001; OSJNBa0093E24.9; Os05g0235300; OsI_19077; OsJ_17723; POPTRDRAFT_1069777; POPTRDRAFT_1087408; RCOM_1704650; TOR;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Ribosomal protein L23/L25, conserved site	IPR001014	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding	IPR009076	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G50030.1	TOR target of rapamycin chr1:18522626-18539619 REVERSE LENGTH=2481	2.0e-22	58%
RefSeq	Arabidopsis thaliana	NP_001117459.1	FKBP12-rapamycin complex-associated protein [Arabidopsis thaliana]	3.0e-22	58%
RefSeq	Populus trichocarpa	XP_002300288.1	predicted protein [Populus trichocarpa]	7.0e-28	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DJS1

Fln msg: Distance to subject end: 636 aas, your sequence is shorter than subject: 117 - 2465

Fln protein: ALKPGLDEDSIHDILVAFQNATEIAVEWSKAWHKWTLFNTAVMSHYIHKGPPALTSQYVVEAIKGYFRSIAFGANTKGGDDLAKVGVHTPQRFGVRALQHPTSSEANRITSGSRCHF

Protein Length: 118

Fln nts: GGGCACTAAAACCTGGACTGGATGAAGACTCAATACATGATATTCTTGTTGCATTTCAAAATGCCACGGAAATTGCTGTTGAATGGTCAAAAGCATGGCACAAGTGGACATTGTTTAACACTGCAGTGATGTCCCATTACATCCATAAAGGCCCTCCTGCTCTCACCAGTCAGTATGTTGTTGAAGCTATAAAAGGATATTTTCGTTCAATAGCATTTGGCGCAAATACAAAAGGGGGAGATGATTTGGCAAAGGTTGGAGTTCACACGCCTCAACGATTTGGTGTACGTGCATTACAACATCCGACTTCGAGTGAGGCAAATAGAATCACCAGTGGATCCAGATGCCATTTCC

Fln Alignment:

F5X2MQL01BK4HM___ALKPGLDEDSIHDILVAFQNATEIAVEWSKAWHKWTLFNTAVMSHYIHKGPPALTSQYVVEAIKGYFRSIAFGANTKGGDD
Q0DJS1_______________ALSPGLDDDSIQEILVSYKNATLNAKDWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain