SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54040

Length: 271 nt

UniGene Fasta

>sp_v3.0_unigene54040
GGAAGGAACATATACAACATCTAGAGCAAGTTCTCATTATATTAGAACATTAGTTCTATGCAAAGATGTCCAAGTGCACCTTCGGGAAGGATGACGTAGAGTACCTCAGACACATAATATCTAATGAAGGAGTAAAAGTAGATCATAATAAGATCAAGGTTATAAATGAATGGCCCAAACTAGTTAACGTCTCCAAGTTAAGAGGATTCTTAGGATTGACTGGGTACTATCGAAGGTTTATTAAAAACTATGCCCATGTAACTGCATCCCT

Ace file of the UniGene sp_v3.0_unigene54040

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	3.0e-21	59%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	53%
Sma3	Polyprotein	-	-	8.246e-07	-

Source	Gene names
Sma3	At2g05610; AtMg00860; F23H6.1; LOC_Os03g42950; LOC_Os03g47840; LOC_Os12g24050; OSIGBa0118P15.5; OSJNBa0041A02.23; OSJNBa0053B21.11; OSJNBb0013K08.14; OSJNBb0070O09.8; Os06g0493000; Os06g0570000; Os08g0451600; VITISV_013478; VITISV_017554; VITISV_026680; V

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00860.1	ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158	6.0e-24	53%
RefSeq	Arabidopsis thaliana	NP_085542.1	hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana]	8.0e-24	53%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Distance to subject end: 68 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 89 - 158

Fln protein: KEHIQHLEQVLIILEH*FYAKMSKCTFGKDDVEYLRHIISNEGVKVDHNKIKVINEWPKLVNVSKLRGFLGLTGYYRRFIKNYAHVTAS

Protein Length: 90

Fln nts: GGAAGGAACATATACAACATCTAGAGCAAGTTCTCATTATATTAGAACATTAGTTCTATGCAAAGATGTCCAAGTGCACCTTCGGGAAGGATGACGTAGAGTACCTCAGACACATAATATCTAATGAAGGAGTAAAAGTAGATCATAATAAGATCAAGGTTATAAATGAATGGCCCAAACTAGTTAACGTCTCCAAGTTAAGAGGATTCTTAGGATTGACTGGGTACTATCGAAGGTTTATTAAAAACTATGCCCATGTAACTGCATCCCT

Fln Alignment:

F5X2MQL01COGQV___IQHLEQVLIILE-H*FYAKMSKCTFGKDDVEYL--RHIISNEGVKVDHNKIKVINEWPKLVNVSKLRGFLGLTGYYRRFIKNYAHV
P92523_______________MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain