SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53829

Length: 449 nt

UniGene Fasta

>sp_v3.0_unigene53829
ATGGGGGATTCTGAGTTTTCGCTTTGCATAAGTCACTGCAATCGGTAGGGGAAGGAACAGAGAGCGTCTCTACCGAGTTCAGGTGGTGTGTTATCATTTATTAAAAACCAATATGCAGATATTTGTAAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGATACCATCGACAATGTCAAGGCGAAGATACAGGATAAGGAGGGAATCCCTCCCGGCCAGCAGCGGCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGACGCACTCTCGCTGACTACAACATCCAAAAGGAATCCACTCTCCACCTCGTTCTACGTCTGAGAGGTGGCATGCAAATATTTGTCAAAACCTTGACTGGCAAGACCATCACCCTTGAAGTTGAGAGCTCTGATACTATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGGATTC

Ace file of the UniGene sp_v3.0_unigene53829

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH	-	-	0.0	96%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	96%
Sma3	Polyubiquitin	-	-	9.465e-08	-

Source	Gene names
Sma3	AT5G03240; At1g55060; At2g36170; At3g09790; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_140045; EgUbi; F11F8_38; F8A24.16; FUBI1; GSVIVT00035709001; GSVIVT00037199001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G05050.1	UBQ11 ubiquitin 11 chr4:2588271-2588960 REVERSE LENGTH=229	96%
RefSeq	Arabidopsis thaliana	NP_001190681.1	ubiquitin 11 [Arabidopsis thaliana]	99%
RefSeq	Populus trichocarpa	XP_002305607.1	predicted protein [Populus trichocarpa]	96%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 112 - 229

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPGQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI

Protein Length: 113

Fln nts: ATGGGGGATTCTGAGTTTTCGCTTTGCATAAGTCACTGCAATCGGTAGGGGAAGGAACAGAGAGCGTCTCTACCGAGTTCAGGTGGTGTGTTATCATTTATTAAAAACCAAT_-_ATGCAGATATTTGTAAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGATACCATCGACAATGTCAAGGCGAAGATACAGGATAAGGAGGGAATCCCTCCCGGCCAGCAGCGGCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGACGCACTCTCGCTGACTACAACATCCAAAAGGAATCCACTCTCCACCTCGTTCTACGTCTGAGAGGTGGCATGCAAATATTTGTCAAAACCTTGACTGGCAAGACCATCACCCTTGAAGTTGAGAGCTCTGATACTATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGGATTC

Fln Alignment:

F585NNT02H2KLK___LKTNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPGQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI
Q7FPA4_______________LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain