SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53560

Length: 111 nt

UniGene Fasta

>sp_v3.0_unigene53560
TTTGATCTTAAATCTGGATTTTGGCAAGTTTGTATCAAGGAAGAAGATAAATGGAAGACAGGATTTACAGTGCCCAAAGGACACTACGAATGGAATGTCATGCCATTTGGA

Ace file of the UniGene sp_v3.0_unigene53560

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to pol polyprotein	-	-	4.0e-07	61%
FL-Next	tr=Putative uncharacterized protein Sb06g013680; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	75%

Source	Gene names
Sma3	GSVIVT00000881001; VITISV_008274; VITISV_010133; VITISV_015783; VITISV_016584; VITISV_018870; VITISV_020611; VITISV_023372; VITISV_023373; VITISV_030626; VITISV_038386;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Flavin amine oxidase	IPR001613	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3		IPR013084	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002300438.1	predicted protein [Populus trichocarpa]	7.0e-13	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YEQ6

Fln msg: Distance to subject end: 310 aas, your sequence is shorter than subject: 37 - 1360

Fln protein: FDLKSGFWQVCIKEEDKWKTGFTVPKGHYEWNVMPFG

Protein Length: 38

Fln nts: TTTGATCTTAAATCTGGATTTTGGCAAGTTTGTATCAAGGAAGAAGATAAATGGAAGACAGGATTTACAGTGCCCAAAGGACACTACGAATGGAATGTCATGCCATTTGGA

Fln Alignment:

F51TW9002FKP3K___FDLKSGFWQVCIKEEDKWKTGFTVPKGHYEWNVMPFG
C5YEQ6_______________FDMKSGFWQIQIKEEDRYKTAFTTPFGHYEWNVMTFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain