SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53513

Length: 118 nt

UniGene Fasta

>sp_v3.0_unigene53513
CAGTGTTCTTCCACTCACACGTCCACAAATGAACCAGGCCCTGATCTTGCGGACTATCCCTATGACACTGTCCCTAACAAAGTGGAGCACCTCTTCTTTGCCCAGCAATATCACGATA

Ace file of the UniGene sp_v3.0_unigene53513

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isocitrate lyase n=1 Tax=Pinus taeda RepID=Q41084_PINTA	-	-	6.0e-17	100%
FL-Next	sp=Isocitrate lyase; Pinus taeda (Loblolly pine).	-	-	0.0	100%
Sma3	Isocitrate lyase	-	-	7.561e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Isocitrate lyase.	EC:4.1.3.1	-	2.366e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630		2.366e-28	%
Sma3	Metabolic pathways	01100		2.366e-28	%

Source	Gene names
Sma3	AT3G21720; At3g21720; GSVIVT00026043001; ICL; ICL 12; ICL 8; ICL1; ICL2; MSD21.3; OSJNBa0007H12.39; Os07g0529000; Os12g0228300; OsI_26281; OsJ_24528; PHATRDRAFT_51088; PHYPADRAFT_137303; PHYPADRAFT_189731; POPTRDRAFT_562291; POPTRDRAFT_741351; RCOM_136292

Source	GOs	Term	Type	Identity
Sma3	glyoxysome	GO:0009514	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	isocitrate lyase activity	GO:0004451	Molecular Function	-
Sma3	glyoxylate cycle	GO:0006097	Biological Process	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	carboxylic acid metabolic process	GO:0019752	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Isocitrate lyase/phosphorylmutase	IPR000918	-	-
Sma3	Isocitrate lyase	IPR006254	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G21720.1	ICL isocitrate lyase chr3:7652789-7655873 REVERSE LENGTH=576	7.0e-23	100%
RefSeq	Arabidopsis thaliana	NP_188809.2	isocitrate lyase [Arabidopsis thaliana]	9.0e-23	100%
RefSeq	Populus trichocarpa	XP_002310458.1	predicted protein [Populus trichocarpa]	8.0e-23	100%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q41084

Fln msg: Distance to subject end: 428 aas, your sequence is shorter than subject: 39 - 573

Fln protein: QCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHD

Protein Length: 40

Fln nts: CAGTGTTCTTCCACTCACACGTCCACAAATGAACCAGGCCCTGATCTTGCGGACTATCCCTATGACACTGTCCCTAACAAAGTGGAGCACCTCTTCTTTGCCCAGCAATATCACGATA

Fln Alignment:

F51TW9002H8GLI___QCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHD
Q41084_______________QCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain