SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53511

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene53511
GACTGACAAGTGGCACCGGATTGAGCGCTCTCATGGAAAGTTTCTTCGTAGTTTTCGCCTACCGGAAAATGCGAAGGTGGACCAGGTGAAGGCTACTATGGAAAATGGAGTGCTAACTGTCACGGTTCCCAAGCAGCCGCAGCCTAAACCTGAGTTAGAGCCATTG

Ace file of the UniGene sp_v3.0_unigene53511

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low-molecular-weight heat shock protein n=1 Tax=Cuscuta japonica RepID=O82149_CUSJA	-	-	1.0e-13	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Heat-shock protein, putative	-	-	3.052e-37	-

Source	Gene names
Sma3	ApHSP16.5; At1g07400; At1g07400/F22G5_20; At1g53540; At1g59860; At2g29500; At3g46230; At5g59720; BcHSP; BcHSP17.6; CJHSP17; F12M12_200; F22G10.20; F23H11.18; GSVIVT00001312001; GSVIVT00018308001; GSVIVT00018328001; GSVIVT00018349001; GSVIVT00018355001; GS

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59720.1	HSP18.2 heat shock protein 18.2 chr5:24062632-24063117 FORWARD LENGTH=161	6.0e-18	78%
RefSeq	Arabidopsis thaliana	NP_200780.1	heat shock protein 18.2 [Arabidopsis thaliana]	8.0e-18	78%
RefSeq	Populus trichocarpa	XP_002312132.1	predicted protein [Populus trichocarpa]	2.0e-19	87%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACL4

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 55 - 158

Fln protein: TDKWHRIERSHGKFLRSFRLPENAKVDQVKATMENGVLTVTVPKQPQPKPELEPL

Protein Length: 56

Fln nts: GACTGACAAGTGGCACCGGATTGAGCGCTCTCATGGAAAGTTTCTTCGTAGTTTTCGCCTACCGGAAAATGCGAAGGTGGACCAGGTGAAGGCTACTATGGAAAATGGAGTGCTAACTGTCACGGTTCCCAAGCAGCCGCAGCCTAAACCTGAGTTAGAGCCATTG

Fln Alignment:

F51TW9002HEQC3___DKWHRIERSHGKFLRSFRLPENAKVDQVKATMENGVLTVTV
D5ACL4_______________DKWHRIERSHGKFLRRFRLPENAKVDEVKATMENGVLTVTV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain