SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53393

Length: 406 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene53393
ATTGGAGGAAGGCCAAGAGATACAAACGAACATGAGAACCATTGGTTGAAGTCAAAGAGGAACAAAGTAGTCATTCATCTGCAGTGGCAGTTGCAACAGCTGCTGCTGCAGAGGCAGCGGCTGCAGCTGCTCATGCTGTTGCCAAGGTTGTGCGTCTTACAGAGTCCTATTACTCTTCCAATTCCCCTGAAGAATGTGCAGCCATCAAAATTCAGACTGCATTTCGGGGTTATCTGGTTAGGAGAAACTTCCACACTCTCAGGGGTCTCATGAGACTGCAAACACTGGTGCAGGGCCAGAGTGTGCGGCGTCAAGCAACAAATACCATGCGCTGCATGCAAGCGCTTGTTAGAGTGCATTCACAAATCTGACTACCAGGAGAATTCGCATGTTTGAGGAAAATCAA

Ace file of the UniGene sp_v3.0_unigene53393 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein IQ-domain 3 [Arabidopsis thaliana] emb\|CAC07920.1\| putative protein [Arabidopsis thaliana] gb\|AAO22750.1\| unknown protein [Arabidopsis thaliana] gb\|AAO64059.1\| unknown protein [Arabidopsis thaliana] gb\|AEE78927.1\| protein IQ-domain 3 [Arabidopsis	-	-	3.0e-15	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Calmodulin binding protein	-	-	4.647e-06	-

Source	Gene names
Sma3	AT4g29150; At3g16490; At3g49260; At3g52290; At3g59690; At4g29150; At5g07240; F19B15.180; F2K15.120; GCA2; GSVIVT00000506001; GSVIVT00001125001; GSVIVT00007477001; GSVIVT00016653001; GSVIVT00018236001; GSVIVT00025333001; GSVIVT00025335001; GSVIVT0002615600

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Ribosomal protein L34e, conserved site	IPR018065	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52290.1	IQD3 IQ-domain 3 chr3:19394441-19396196 FORWARD LENGTH=430	1.0e-19	61%
RefSeq	Arabidopsis thaliana	NP_190797.1	protein IQ-domain 3 [Arabidopsis thaliana]	2.0e-19	61%
RefSeq	Populus trichocarpa	XP_002315283.1	predicted protein, partial [Populus trichocarpa]	6.0e-23	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV67

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 308 aas, your sequence is shorter than subject: 123 - 499

Fln protein: WRKAKRYKRT*EPLVEVKEEQSSHSSAVAVATAAAAEAAAAAAHAVAKVVRLTESYYSSNSPEECAAIKIQTAFRGYLVRRNFHTLRGLMRLQTLVQGQSVRRQATNTMRCMQALVRVHSQI*

Protein Length: 124

Fln nts: ATTGGAGGAAGGCCAAGAGATACAAACGAACATGAGAACCATTGGTTGAAGTCAAAGAGGAACAAAGTAGTCATTCATCTGCAGTGGCAGTTGCAACAGCTGCTGCTGCAGAGGCAGCGGCTGCAGCTGCTCATGCTGTTGCCAAGGTTGTGCGTCTTACAGAGTCCTATTACTCTTCCAATTCCCCTGAAGAATGTGCAGCCATCAAAATTCAGACTGCATTTCGGGGTTATCTGGTTAGGAGAAACTTCCACACTCTCAGGGGTCTCATGAGACTGCAAACACTGGTGCAGGGCCAGAGTGTGCGGCGTCAAGCAACAAATACCATGCGCTGCATGCAAGCGCTTGTTAGAGTGCATTCACAAATCTGACTACCAGGAGAATTCGCATGTTTGAGGAAAATCAA

Fln Alignment:

F51TW9001B5N2Z___EPLVEVKEEQSSHSSXXXXXXXXXXXXXXXXXXXXXXXVRLTESYYSSNSPEECAAIKIQTAFRGYLVRRNFHTLRGLMRLQTLVQGQSVRRQATNTMRCMQALVRVHSQI
A9NV67_______________KPLVEVKEEQNSHASAVAVATAAAAEAAAAAAHAVAKVVRLTESYYSTNSPEECAAIKIQTAFRGYLVRRNFHTLRGLMRLQALVQGQSVRRQATNTMRCMQALVRVHSQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain