SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53238

Length: 164 nt

UniGene Fasta

>sp_v3.0_unigene53238
GATCAAGCTTCAAATTTGGGATACAGCAGGGCAAGAACGATTTAGAACAATTACAGCTATTATCGTGGTGCACATGGTATCATTGNGGTTTATGATGTTACCGACCAGGAGAGTTTCAATAATGTGAAGCAATGGTTGAATGAGATTGATCGCTATGCGAGTGA

Ace file of the UniGene sp_v3.0_unigene53238

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative Ras-related protein Rab-1C n=2 Tax=Theria RepID=RAB1C_HUMAN	-	-	4.0e-15	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Small GTP-binding protein	-	-	2.309e-11	-

Source	Gene names
Sma3	24.t00078; 26.t00059; 27.t00047; 40.t00023; ARA-5; AT4g17530; AT5g47200/MQL5_5; ATFP8; At1g02130; At3g11730; At4g17530; At5g47200; At5g47201; CHLREDRAFT_60490; F26K24.2; GSVIVT00011421001; GSVIVT00014195001; GSVIVT00035296001; LeRab1A; LeRab1B; LeRab1C; M

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR012335	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G02130.1	ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 RAS 5 chr1:400350-401788 REVERSE LENGTH=203	7.0e-19	79%
RefSeq	Arabidopsis thaliana	NP_171715.1	Ras-related protein RABD2A [Arabidopsis thaliana]	9.0e-19	79%
RefSeq	Populus trichocarpa	XP_002304305.1	predicted protein [Populus trichocarpa]	7.0e-20	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPH9

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 54 - 202

Fln protein: DQASNLGYSRARTI*NNYSYYRGAHGIIEVYDVTDQESFNNVKQWLNEIDRYAS

Protein Length: 55

Fln nts: GATCAAGCTTCAAATTTGGGATACAGCAGGGCAAGAACGATTTAGAACAATTACAGCTATTATCGTGGTGCACATGGTATCATTGaGGTTTATGATGTTACCGACCAGGAGAGTTTCAATAATGTGAAGCAATGGTTGAATGAGATTGATCGCTATGCGAGTGA

Fln Alignment:

F5X2MQL01DE6JT___GYSRARTI*NNYSYYRGAHGIIEVYDVTDQESFNNVKQWLNEIDRYAS
A9NPH9_______________GQERFRTI--TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain