SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52621

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene52621
CTCTAGCTATTACAACTTCGTCTCGCATAAACTCTCGCCGATTTAGCATTGTTGTTACTGTTGCTGGAGATGAAAATGATGTTGAAGATCTTGAGATGCTACTAGAGGCCTATTTCATGCAAATTGATGGAACTCGCAATAAGATATTGTCGGTAAGTATTTTCCCTTTGTCCAAATGCGTGTGATAAATTT

Ace file of the UniGene sp_v3.0_unigene52621

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA splicing protein mrs2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SXF0_RICCO	-	-	6.0e-09	75%
FL-Next	sp=Magnesium transporter MRS2-4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%

Source	Gene names
Sma3	At3g58970; F17J16_20; GSVIVT00026430001; LOC_Os10g39790; MRS2-4; OSJNBa0001O14.11; Os10g0545000; OsI_34529; OsJ_28078; POPTRDRAFT_584520; POPTRDRAFT_762323; RCOM_0320810;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G58970.1	MGT6, MRS2-4 magnesium transporter 6 chr3:21789659-21791163 REVERSE LENGTH=436	9.0e-12	65%
RefSeq	Arabidopsis thaliana	NP_567076.1	magnesium transporter MRS2-4 [Arabidopsis thaliana]	1.0e-11	65%
RefSeq	Populus trichocarpa	XP_002331382.1	predicted protein [Populus trichocarpa]	4.0e-13	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93ZD7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 79 aas, your sequence is shorter than subject: 61 - 436

Fln protein: LAITTSSRINSRRFSIVVTVAGDENDVEDLEMLLEAYFMQIDGTRNKILSVSIFPLSKCV*

Protein Length: 62

Fln nts: CTCTAGCTATTACAACTTCGTCTCGCATAAACTCTCGCCGATTTAGCATTGTTGTTACTGTTGCTGGAGATGAAAATGATGTTGAAGATCTTGAGATGCTACTAGAGGCCTATTTCATGCAAATTGATGGAACTCGCAATAAGATATTGTCGGTAAGTATTTTCCCTTTGTCCAAATGCGTGTGATAAATTT

Fln Alignment:

F51TW9002IFZE0___RINSRRFSIVVTVAGDENDVEDLEMLLEAYFMQIDGTRNKILSV
Q93ZD7_______________RLTSNRSASMVTSNTEEDDVEDLEMLLEAYFMQLDGMRNKILTV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain