SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52596

Length: 295 nt

UniGene Fasta

>sp_v3.0_unigene52596
GCAGAAATTTCCAGGACCTGTTTGGAAGCATCAAAATCTGAATTACAGGGATGTCCATGGAAATCTTCAGATTTTGAATTCTAAGATTCTTACTAATGAAGAACAAGAAGGTTAACAAGTCCTTATACAGTTGATTATTATACTCTTATTGGTTTGAAAAGAGGTTGCACAAGGGCAGACGTTGAGCGTGCACATATGTTACTTTGCCTGAGGCATACGCCTGATAAAGCTTCTCAATTTGTTGATCGCTGCGAGTTTGTGGATGAAAGAGATATTGATACTGTTAAATATCAGG

Ace file of the UniGene sp_v3.0_unigene52596

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ domain containing protein	-	-	8.0e-05	29%
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	48%

Source	Gene names
Sma3	At2g47440; GSVIVT00028093001; POPTRDRAFT_774720; RCOM_1347440; VITISV_036192;

Source	GOs	Term	Type	e value	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G47440.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr2:19469912-19471660 FORWARD LENGTH=526	2.0e-23	62%
RefSeq	Arabidopsis thaliana	NP_182266.1	tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-23	62%
RefSeq	Populus trichocarpa	XP_002320311.1	predicted protein [Populus trichocarpa]	5.0e-23	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7KSS0

Fln msg: Separated hits, possible frame ERROR between 88 and 106, Distance to subject end: 124 aas, your sequence is shorter than subject: 98 - 574

Fln protein: QKFPGPVWKHQNLNYRDVHGNLQILNSKxxxxxxxRRLTSPYTVDYYTLIGLKRGCTRADVERAHMLLCLRHTPDKASQFVDRCEFVDERDIDTVKYQ

Protein Length: 99

Fln nts: GCAGAAATTTCCAGGACCTGTTTGGAAGCATCAAAATCTGAATTACAGGGATGTCCATGGAAATCTTCAGATTTTGAATTCTAAGATxxxxxxxxxxxxxxxxxxAAGAAGGTTAACAAGTCCTTATACAGTTGATTATTATACTCTTATTGGTTTGAAAAGAGGTTGCACAAGGGCAGACGTTGAGCGTGCACATATGTTACTTTGCCTGAGGCATACGCCTGATAAAGCTTCTCAATTTGTTGATCGCTGCGAGTTTGTGGATGAAAGAGATATTGATACTGTTAAATATCAGG

Fln Alignment:

F51TW9002HN53O___QKFPGPVWKHQNLNYRDVHGNLQILNSKIxxxxxxRRLTSPYT--VDYYTLIGLKRGCTRADVERAHMLLCLRHTPDKASQFVDRCEFVDERDIDTVK
G7KSS0_______________RKLPGPAWKRHNVRYREIPGKLCALTTKIxxxxxxQRLSSGETTSVDYYALIGVRRGCSRSELERAHLLLCLRHKPDKATNFIERCEFADERDIDTVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain