SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52348

Length: 425 nt

UniGene Fasta

>sp_v3.0_unigene52348
ATGGGGACATTCATTCAGGCATCTACATTCCCTCTCTGCTGGGTCAGTAATATTACAGGAACACAGATCAGAGAGGGTTTTTGTAGATTCTTCAATTATTTTGGGCAGTTGAATTGCATATGTCTCAGAGGAAGCGGCTGTGATTACGGCGAGCGAGAGAGCTTACGAAGGAGTTGTTCTTTTGTTGGGTGCTGAAGGGGTTCTTGTTCCAGAAAAATGGGCTTCAAGGGTTTTCTGGAAGGAGGGATTGCCTCGGTTATCGCAGGATGTAGCACGCACCCTCTGGATCTGATAAAAGTACGCAGCTGGCCTCTATGATCAGATCAAGGAGACCATCATCTCACATGATATTATGAAGGACGGTCTAGGCACGCATGTCACAGCTAGCTTCAGTGCAGGGTTTGTGGCTGCCGTGGCTTCGAATC

Ace file of the UniGene sp_v3.0_unigene52348

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative mitochondrial dicarboxylate carrier protein [Trifolium pratense]	-	-	2.0e-07	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Mitochondrial dicarboxylate carrier protein, putative	-	-	6.257e-17	-

Source	Gene names
Sma3	AT4G24570; AT4g24570; At2g22500; At2g22500/F14M13.10; At4g24570; F22K18.230; GSVIVT00011464001; GSVIVT00015121001; MITC; OJ1113_A10.6; OJ1666_A04.30; OsI_29614; OsJ_27682; POPTRDRAFT_258215; POPTRDRAFT_551644; POPTRDRAFT_763966; POPTRDRAFT_831456; RCOM_00

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	mitochondrial transport	GO:0006839	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial brown fat uncoupling protein	IPR002030	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg: Separated hits, possible frame ERROR between 303 and 314, Distance to subject end: 75 aas, your sequence is shorter than subject: 70 - 314

Fln protein: MGFKGFLEGGIASVIAGCSTHPLDLIKVxxxxxYDQIKETIISHDIMKDGLGTHVTASFSAGFVAAVASN

Protein Length: 71

Fln nts: ATGGGGACATTCATTCAGGCATCTACATTCCCTCTCTGCTGGGTCAGTAATATTACAGGAACACAGATCAGAGAGGGTTTTTGTAGATTCTTCAATTATTTTGGGCAGTTGAATTGCATATGTCTCAGAGGAAGCGGCTGTGATTACGGCGAGCGAGAGAGCTTACGAAGGAGTTGTTCTTTTGTTGGGTGCTGAAGGGGTTCTTGTTCCAGAAAA_-_ATGGGCTTCAAGGGTTTTCTGGAAGGAGGGATTGCCTCGGTTATCGCAGGATGTAGCACGCACCCTCTGGATCTGATAAAAGTACGxxxxxxxxxxxxCTATGATCAGATCAAGGAGACCATCATCTCACATGATATTATGAAGGACGGTCTAGGCACGCATGTCACAGCTAGCTTCAGTGCAGGGTTTGTGGCTGCCGTGGCTTCGAATC

Fln Alignment:

F51TW9002FO0Z4___MGFKGFLEGGIASVIAGCSTHPLDLIKVRxxxxYDQIKETIISHDIMKDGLGTHVT
C0PSC7_______________MGVKGFVEGGIASVVAGCSTHPLDLIKVRxxxxYDQIKETIISRDIMKDGLGTHVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain