SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52150

Length: 259 nt

UniGene Fasta

>sp_v3.0_unigene52150
ATGGGGGTCTGGATGCCTAATTGTTGTGTTTGAAGGCGCCGAGCCTGGACGGACCGCTTCAGCACTTTGGGCGCACAACTCCTCCATTCCATCAATCATGGCTTGTGCAATTGGATTTCAGGTCAGACATAGAACCTGTTGATCCTAGGGCATGCATTGAGGAGTCCTGCAAGTCAAGTTGTGTGAAGCCACTTTTTCAATATCAGGCATGCGTGAAGAGAGTAGCATCTGATGAGACTGGGCACAAGCATTGTACAGG

Ace file of the UniGene sp_v3.0_unigene52150

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9T2H1_RICCO	-	-	3.0e-13	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	Gene names
Sma3	AT1G15120; At1g15120; At2g01090; F9L1.5; LOC_Os11g06340; Os11g0162200; OsI_35238; OsJ_33084; PHYPADRAFT_113114; POPTRDRAFT_710785; POPTRDRAFT_714709; RCOM_0454060;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	ubiquinol-cytochrome-c reductase activity	GO:0008121	Molecular Function	-
Sma3	mitochondrial electron transport, ubiquinol to cytochrome c	GO:0006122	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b-c1 complex, subunit 6	IPR003422	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15120.2	-	5.0e-17	62%
RefSeq	Arabidopsis thaliana	NP_172964.1	Ubiquinol-cytochrome C reductase hinge protein [Arabidopsis thaliana]	2.0e-17	64%
RefSeq	Populus trichocarpa	XP_002300923.1	predicted protein [Populus trichocarpa]	3.0e-19	68%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8E2

Fln msg: Distance to subject end: 22 aas, W1: There is no M at the beginning,

Fln protein: LLCLKAPSLDGPLQHFGRTTPPFHQSWLVQLDFRSDIEPVDPRACIEESCKSSCVKPLFQYQACVKRVASDETGHKHCT

Protein Length: 80

Fln nts: ATGGGGGTCTGGATGCCTAATTGTTGTGTTTGAAGGCGCCGAGCCTGGACGGACCGCTTCAGCACTTTGGGCGCACAACTCCTCCATTCCATCAATCATGGCTTGTGCAATTGGATTTCAGGTCAGACATAGAACCTGTTGATCCTAGGGCATGCATTGAGGAGTCCTGCAAGTCAAGTTGTGTGAAGCCACTTTTTCAATATCAGGCATGCGTGAAGAGAGTAGCATCTGATGAGACTGGGCACAAGCATTGTACAGG

Fln Alignment:

F51TW9001AFYFQ___SDIEPVDPRACIEESCKSSCVKPLFQYQACVKRVASDETGHKHCT
D5A8E2_______________SDTEPVDPKACIEESCKSNCVKPLFQYQACVKRVESDETGHKHCT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain