SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52020

Length: 143 nt

UniGene Fasta

>sp_v3.0_unigene52020
ATGGGCAAGGTAGTAAGACTGATATACACCGATTCCGGTGTTGCTCTTTTAGCACTGACATCCAATGCTTTCCATAAGCTATGGAAATGACAGAGGAGTGACCGGAATCCATCTGGAAAGTAATGATCGACAAGGAACTAAGA

Ace file of the UniGene sp_v3.0_unigene52020

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1	-	-	0.0	65%
Sma3	WD-40 repeat protein-like	-	-	5.382e-07	-

Source	Gene names
Sma3	GSVIVT00003228001; GSVIVT00014065001; LOC_Os03g14980; Os01g0254100; Os03g0254700; Os08g0162100; OsI_01216; OsI_10796; OsI_27917; OsJ_01134; OsJ_08437; OsJ_26138; P0577B11.132; P0705D01.10-1; PHYPADRAFT_150439; PHYPADRAFT_234967; POPTRDRAFT_736537; POPTRDR

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002308068.1	predicted protein [Populus trichocarpa]	3.0e-13	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV90-1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 316 aas, your sequence is shorter than subject: 30 - 1119

Fln protein: MGKVVRLIYTDSGVALLALTSNAFHKLWK*

Protein Length: 31

Fln nts: ATGGGCAAGGTAGTAAGACTGATATACACCGATTCCGGTGTTGCTCTTTTAGCACTGACATCCAATGCTTTCCATAAGCTATGGAAATGACAGAGGAGTGACCGGAATCCATCTGGAAAGTAATGATCGACAAGGAACTAAGA

Fln Alignment:

F51TW9001CSHTP___KVVRLIYTDSGVALLALTSNAFHKLWK*QRSDRNPSGK
Q0WV90-1_____________KISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain