SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52013

Length: 122 nt

UniGene Fasta

>sp_v3.0_unigene52013
ATGGGGAATGGAAAATCCCCACATCCATAAAGCATCTGCGAGGATTCCTTGGGTTGACAGGGTATTATCGTAAGCTTGTTAAGAATTATAGGAGAATAGCAGTACCTCTAACAACATTATTG

Ace file of the UniGene sp_v3.0_unigene52013

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os08g0451600 protein n=2 Tax=Oryza sativa RepID=Q0J5A3_ORYSJ	-	-	3.0e-07	65%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	63%

Source	Gene names
Sma3	VITISV_017554; VITISV_026680; VITISV_044100;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92523

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 40 - 158

Fln protein: GEWKIPTSIKHLRGFLGLTGYYRKLVKNYRRIAVPLTTLL

Protein Length: 41

Fln nts: ATGGGGAATGGAAAATCCCCACATCCATAAAGCATCTGCGAGGATTCCTTGGGTTGACAGGGTATTATCGTAAGCTTGTTAAGAATTATAGGAGAATAGCAGTACCTCTAACAACATTATTG

Fln Alignment:

F51TW9001BEZJY___WKIPTSIKHLRGFLGLTGYYRKLVKNYRRIAVPLTTLL
P92523_______________WPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain