SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51779

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene51779
CCTTGCACACATTTGTTGCAGAAGACAGATCACACCCACAAAGTGAAGAAATCTATGCAAAACTGAGGGAACTAACCAAGCAGATCAAAGAAGCAGGCTATGTACTTGACCCAAGTTTTGCATTGCATAATATGGAGCAGGAACAAAAGGAACAGTGTCTATTTCATCATAGTGAGAGGCTGGCCATTGC

Ace file of the UniGene sp_v3.0_unigene51779

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U8_CYCRE	-	-	2.0e-15	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	Gene names
Sma3	At3g49140; F2K15.2; GSVIVT00003383001; GSVIVT00023808001; GSVIVT00025530001; GSVIVT00035690001; PCMP-H77; PHYPADRAFT_175641; PHYPADRAFT_192620; POPTRDRAFT_282578; POPTRDRAFT_586988; POPTRDRAFT_719111; PPR; T2J13.20; VITISV_014689; VITISV_016374;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G09950.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:3102877-3105864 REVERSE LENGTH=995	7.0e-17	51%
RefSeq	Arabidopsis thaliana	NP_196557.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	9.0e-17	51%
RefSeq	Populus trichocarpa	XP_002331875.1	predicted protein [Populus trichocarpa]	1.0e-17	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 62 - 246

Fln protein: LHTFVAEDRSHPQSEEIYAKLRELTKQIKEAGYVLDPSFALHNMEQEQKEQCLFHHSERLAI

Protein Length: 63

Fln nts: CCTTGCACACATTTGTTGCAGAAGACAGATCACACCCACAAAGTGAAGAAATCTATGCAAAACTGAGGGAACTAACCAAGCAGATCAAAGAAGCAGGCTATGTACTTGACCCAAGTTTTGCATTGCATAATATGGAGCAGGAACAAAAGGAACAGTGTCTATTTCATCATAGTGAGAGGCTGGCCATTGC

Fln Alignment:

F51TW9001D308G___LHTFVAEDRSHPQSEEIYAKLRELTKQIKEAGYVLDPSFALHNMEQEQKEQCLFHHSERLAI
D5AAE0_______________VHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain