SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51710

Length: 578 nt

UniGene Fasta

>sp_v3.0_unigene51710
CCGGGCCAGACGGTATCACCATCAATTTCTACAAAGTCTGCTGGGAAATTGTCAAGAACGATATTTGGGAAATCGTGGAGGACTCAAGAAGATCTAAAACTATACTTAAATCTTTAAATTCAACCTTTATAGCTCTAGTTCCCAAAGTAGAGGAGGCCCACACCCCGGAAAAATTCCGACCCATAGCCCTCTGCAATGTTATATATAAGATCATATCCAAAGTTATCGCCAACAGGCTGAAGATCATCCTCCCAGGCATCATTTCGCAGGAACAGTCCGGCTATGTGGAAGGCAGGCAGATTCTGGACAACATTTTGCTGGCCCAGGAAATGATACATTCTCTCCATTCAAGGAAAGTTGCTGGAATGCTAATACAGTTGGACCTATCCAAAGCCTATGATAAGGTGAGTTGGACTTACCTGGAAGCTATTTTAAAAGCTTTTGGCTTCAGCCGGCCGTGGATCAAATGGGTATTAGAACTCATTAAATCCATGAGATATTCTGTCCTAGTGAATGGCACTCCCTCCACGCCCTTCAGCCCTTCAAGAGGCATAAGACAAGGTTACCCATTAAGACCG

Ace file of the UniGene sp_v3.0_unigene51710

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL	-	-	100%
FL-Next	tr=Putative uncharacterized protein AT4g10830; Arabidopsis thaliana (Mouse-ear cress).	-	-	48%
Sma3	Reverse transcriptase	-	-	-

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase	IPR000477	-	0.0	-
Sma3		IPR015706	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9SN65

Fln msg: Distance to subject end: 291 aas, your sequence is shorter than subject: 192 - 1294

Fln protein: GPDGITINFYKVCWEIVKNDIWEIVEDSRRSKTILKSLNSTFIALVPKVEEAHTPEKFRPIALCNVIYKIISKVIANRLKIILPGIISQEQSGYVEGRQILDNILLAQEMIHSLHSRKVAGMLIQLDLSKAYDKVSWTYLEAILKAFGFSRPWIKWVLELIKSMRYSVLVNGTPSTPFSPSRGIRQGYPLRP

Protein Length: 193

Fln nts: CCGGGCCAGACGGTATCACCATCAATTTCTACAAAGTCTGCTGGGAAATTGTCAAGAACGATATTTGGGAAATCGTGGAGGACTCAAGAAGATCTAAAACTATACTTAAATCTTTAAATTCAACCTTTATAGCTCTAGTTCCCAAAGTAGAGGAGGCCCACACCCCGGAAAAATTCCGACCCATAGCCCTCTGCAATGTTATATATAAGATCATATCCAAAGTTATCGCCAACAGGCTGAAGATCATCCTCCCAGGCATCATTTCGCAGGAACAGTCCGGCTATGTGGAAGGCAGGCAGATTCTGGACAACATTTTGCTGGCCCAGGAAATGATACATTCTCTCCATTCAAGGAAAGTTGCTGGAATGCTAATACAGTTGGACCTATCCAAAGCCTATGATAAGGTGAGTTGGACTTACCTGGAAGCTATTTTAAAAGCTTTTGGCTTCAGCCGGCCGTGGATCAAATGGGTATTAGAACTCATTAAATCCATGAGATATTCTGTCCTAGTGAATGGCACTCCCTCCACGCCCTTCAGCCCTTCAAGAGGCATAAGACAAGGTTACCCATTAAGACCG

Fln Alignment:

AJ228333___GPDGITINFYKVCWEIVKNDIWEIVEDSRRSKTILKSLNSTFIALVPKVEEAHTPEKFRPIALCNVIYKIISKVIANRLKIILPGIISQEQSGYVEGRQILDNILLAQEMIHSLHSRKVAG---MLIQLDLSKAYDKVSWTYLEAILKAFGFSRPWIKWVLELIKSMRYSVLVNGTPSTPFSPSRGIRQGYPLRP
Q9SN65_______________GPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain