SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51709

Length: 577 nt

UniGene Fasta

>sp_v3.0_unigene51709
CTGGTCCTGATGGATTACTGCCAACTACTTTCAGCACTTCTGGGAACTAATCAAATGGGAAGTCTGGCAGGTAGTGGAAGAATCCCGCAATCTCCGTTGGATGTACCCAGCCATGAACGCAACATTCATTGCGCTCATCCCCAAAACTGAGGAATCCAGCTCTCCAGACAAATACAGACCCATTGCCTTGTGCAACATGATTTACAAGATAGTCTCAAAAGTCATAGCTTTACGATTGAAGCCCATGCTCCCTCTCATAATATCTCCAGAACAATCGGGATATGTGGAAGGAAGATAAATTACAGATGGGATTATATTAACCCATGAAATAATACATTCCCTCAAGCAAACAAAAAAACCAGGTATGTTGCTCAAAATCGATCTATCCAAAGCTTTTGACAGTATTAGTTGGGAATATCTGCAAAATATCCTTAAGGCTTTTGGCTTTGCCCCCCCTTGGATCAGATGGATCAACAATCTTCTTTCATCCTCTTTCTTTTCCATTCTCATTAATGGCATCCCTTCTCCTACTTTTCGTCCTTCTAGAGGCATTAGACAGGGAGATCCGTTTAGACCG

Ace file of the UniGene sp_v3.0_unigene51709

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus strobus RepID=O65877_PINST	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein Sb08g007680; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	45%
Sma3	Reverse transcriptase	-	-	2.593e-08	-

Source	Gene names
Sma3	At2g16680; LOC_Os12g16750; LOC_Os12g36390; MtrDRAFT_AC149134g40v2; MtrDRAFT_AC174468g19v1; Os12g0550500; OsJ_23164; OsJ_29974; OsJ_36426; VITISV_001198; reverse transcriptase;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: C5YTX1

Fln msg: Distance to subject end: 448 aas, atg_distance in limit (1-15): atg_distance = 8, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 189 - 649

Fln protein: WITANYFQHFWELIKWEVWQVVEESRNLRWMYPAMNATFIALIPKTEESSSPDKYRPIALCNMIYKIVSKVIALRLKPMLPLIISPEQSGYVEGR*ITDGIILTHEIIHSLKQTKKPGMLLKIDLSKAFDSISWEYLQNILKAFGFAPPWIRWINNLLSSSFFSILINGIPSPTFRPSRGIRQGDPFRP

Protein Length: 190

Fln nts: CTGGTCCTG_-_ATGGATTACTGCCAACTACTTTCAGCACTTCTGGGAACTAATCAAATGGGAAGTCTGGCAGGTAGTGGAAGAATCCCGCAATCTCCGTTGGATGTACCCAGCCATGAACGCAACATTCATTGCGCTCATCCCCAAAACTGAGGAATCCAGCTCTCCAGACAAATACAGACCCATTGCCTTGTGCAACATGATTTACAAGATAGTCTCAAAAGTCATAGCTTTACGATTGAAGCCCATGCTCCCTCTCATAATATCTCCAGAACAATCGGGATATGTGGAAGGAAGATAAATTACAGATGGGATTATATTAACCCATGAAATAATACATTCCCTCAAGCAAACAAAAAAACCAGGTATGTTGCTCAAAATCGATCTATCCAAAGCTTTTGACAGTATTAGTTGGGAATATCTGCAAAATATCCTTAAGGCTTTTGGCTTTGCCCCCCCTTGGATCAGATGGATCAACAATCTTCTTTCATCCTCTTTCTTTTCCATTCTCATTAATGGCATCCCTTCTCCTACTTTTCGTCCTTCTAGAGGCATTAGACAGGGAGATCCGTTTAGACCG

Fln Alignment:

AJ228330___TANYFQHFWELIKWEVWQVVEESRNLRWMYPAMNATFIALIPKTEESSSPDKYRPIALCNMIYKIVSKVIALRLKPMLPLIISPEQSGYVEGR*ITDGIILTHEIIHSLKQT--KKPGMLLKIDLSKAFDSISWEYLQNILKAFGFAPPWIRWXXXXXXXXXXXXXXXGIPSPTFRPSRGIRQGDPFRP
C5YTX1_______________TARFYQLHWDLIGKEVTTAVLNFLNGGTLPADINHTTIVLIPKTRNPQGMTEFRPISLCNVLYKICSKVLALRLREFLDEIISEEQSAFVPGRLITDNVLISYECIHYLKRRKGKNGACAIKLDMAKAYDPVEWEYLQGIMLKLGFHEAFVRMIMKCVTTVSFSIRVNGVPTQSFRPTRGIRQGDPISP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain